Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_M11
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64851-2|AAC47987.1|  613|Caenorhabditis elegans Hypothetical pr...    30   2.5  
U42438-8|AAF99867.2|  368|Caenorhabditis elegans Homolog of yeas...    29   4.4  
AF105010-1|AAD16893.1|  368|Caenorhabditis elegans LAG1Ce-1 prot...    29   4.4  

>U64851-2|AAC47987.1|  613|Caenorhabditis elegans Hypothetical
           protein F28A12.1 protein.
          Length = 613

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +2

Query: 41  YRYTKLRE*SCPLNRSVQYDRRNLASLNIAAGELSRMYTSKKSVISINFLN 193
           + Y  ++  +   NRS  Y R+N+A +NI   EL   YTS   V +   LN
Sbjct: 413 FNYNSMKWLTRETNRSASYIRQNIAIINIHFMEL--FYTSYSQVKATTILN 461


>U42438-8|AAF99867.2|  368|Caenorhabditis elegans Homolog of yeast
           longevity geneprotein 1 protein.
          Length = 368

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -1

Query: 125 YSDSPSYVGRIVLSDLVGNFILLILCTGKILRIPYSESYG 6
           Y  SP Y  R+++  L+  F L I  T  ILRI Y  S G
Sbjct: 265 YQLSPPYAPRLIVFALILLFFLHIFWTFIILRIAYRTSTG 304


>AF105010-1|AAD16893.1|  368|Caenorhabditis elegans LAG1Ce-1
           protein.
          Length = 368

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -1

Query: 125 YSDSPSYVGRIVLSDLVGNFILLILCTGKILRIPYSESYG 6
           Y  SP Y  R+++  L+  F L I  T  ILRI Y  S G
Sbjct: 265 YQLSPPYAPRLIVFALILLFFLHIFWTFIILRIAYRTSTG 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,761,758
Number of Sequences: 27780
Number of extensions: 229335
Number of successful extensions: 643
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)