Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_M10
(878 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p... 105 6e-24
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 29 1.2
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.5
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 27 4.7
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 26 6.1
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 26 6.1
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.1
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 26 8.1
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 26 8.1
>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 216
Score = 105 bits (253), Expect = 6e-24
Identities = 64/189 (33%), Positives = 103/189 (54%), Gaps = 1/189 (0%)
Frame = +1
Query: 106 NIFLNKI-MSALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFSAASKTKALDI 282
+IF I ++A +L +RSL+T+ ASA PPVQ++GL+G YAS+L++AA K LD
Sbjct: 3 HIFRRSIPITARLPSLGIRSLATATASAH---PPVQLYGLDGSYASSLYTAAVKESKLDN 59
Query: 283 VEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENG 462
VEK L + ++ + +++I +P + R K + + P N +L +N
Sbjct: 60 VEKALNKLSGVLQQRPEFEQYISSPWLTREDKKILVSSLTQMTGNEPLLKNFYNVLLDNH 119
Query: 463 RLGKLEAVINAFKIMMAAHRGEVACEVVTAKPLDQAQRQNLEAALKKFLKGNETVQLTAK 642
RL L + F +M A RGE+ ++ +A PLD LE+ + K G + ++ K
Sbjct: 120 RLYLLTRIQKQFSTLMRAKRGEIEVKITSATPLDSKILSRLESRIAKSKYGKGKLLVSNK 179
Query: 643 VDPSLIGGM 669
V PS+IGG+
Sbjct: 180 VTPSIIGGL 188
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 558 WFGCNNFTSYFTPVGSHHNLKSINDSLQFPQATI 457
W G +F + F + +H + S+N L F QA I
Sbjct: 261 WLGPEHFLNEFFTLNTHQKVSSLNYHLAFQQARI 294
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 27.1 bits (57), Expect = 3.5
Identities = 21/94 (22%), Positives = 41/94 (43%)
Frame = +1
Query: 85 KYYLTCANIFLNKIMSALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFSAASK 264
K+Y + L + + KG L + + + V+ V +G E + A
Sbjct: 564 KFYKVTIDPLLQRYVIGSKGKNLQK-----LRNEHQVELLVGEYGEEDPDVIVCYIGADD 618
Query: 265 TKALDIVEKELCQFQQSIKTDAKLKEFIINPTIK 366
K+ D ++KEL +S+K+ A+ I++ I+
Sbjct: 619 GKSPDQIQKELADLAESVKSSAEASAKIVSEIIQ 652
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 32 ILKILARNILVDKAKSLKNI 91
+LKI A N+++DK SLK++
Sbjct: 563 LLKIYANNVIIDKRISLKDV 582
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 395 CFNASTFMLLFIVGLMMNSLSF-ASVLID 312
C F+LL GL+MN L+F ASV+++
Sbjct: 1296 CITRVYFLLLKACGLIMNGLNFEASVMLE 1324
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 500 LKALMTASSFPKRPFSASNPSRLPVVG 420
L +T + P++PFS S+P+ P +G
Sbjct: 233 LNQALTLINLPEQPFSISSPTATPQLG 259
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 461 PFSASNPSRLPVVGERLILLATCFNASTFML 369
PFS S+LPV G ILL F +T+++
Sbjct: 3 PFSFDPSSKLPVTGIYNILLFNLFPLATYLV 33
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 443 PSRLPVVGERLILLATCFNASTFMLLFIVGLMMNSLSFASV 321
P + P ++ CF A F+++FI + LSF +V
Sbjct: 188 PLKRPNTSISNVIWLICFGAPLFLVIFICYIFFTVLSFFNV 228
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +1
Query: 382 DALKHVANKISLSPTTGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEVAC 537
+AL N+I + T + LGL+ RL + +MA H G + C
Sbjct: 5 EALHVGCNRIPTAATWSSNLGLIYGAERLIAVADPFKEINYLMAGHSGRINC 56
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,354,609
Number of Sequences: 5004
Number of extensions: 71586
Number of successful extensions: 202
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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