Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_M10
(878 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0928 + 26024589-26024645,26024900-26024956,26025464-260257... 100 1e-21
02_05_0759 + 31545473-31546204 63 2e-10
04_04_1251 + 32083164-32083284,32083448-32083614,32083719-320837... 30 2.1
07_03_1116 - 24084162-24084201,24084481-24084570,24084640-240852... 30 2.8
03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499 29 6.5
03_02_0358 + 7784067-7784128,7784239-7785040,7785513-7785617,778... 29 6.5
01_06_1620 + 38697960-38698131,38698532-38700732 29 6.5
>06_03_0928 +
26024589-26024645,26024900-26024956,26025464-26025707,
26026126-26026238,26026675-26026761,26026843-26026962
Length = 225
Score = 100 bits (240), Expect = 1e-21
Identities = 55/173 (31%), Positives = 94/173 (54%), Gaps = 2/173 (1%)
Frame = +1
Query: 157 RSLSTSVA--SAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELCQFQQSIKTDA 330
R ++ VA + + +K P ++G G YASALF A+K LD VE E+ ++ K
Sbjct: 23 RGFASQVAKPTGKDIKVPEALYGGTGNYASALFLTAAKANLLDKVETEIRDVVEASKKSP 82
Query: 331 KLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLGKLEAVINAFKIMM 510
+FI + ++ + +V A+ + + S T N L +LA+NGRL ++ + F +
Sbjct: 83 LFSQFIKDLSVPKETRVKAITEIFAEAGFSDVTKNFLAVLADNGRLKHIDRIAERFVDLT 142
Query: 511 AAHRGEVACEVVTAKPLDQAQRQNLEAALKKFLKGNETVQLTAKVDPSLIGGM 669
AH+GEV V T PL + + + L+ L+ L N+T+ + K+D S++GG+
Sbjct: 143 MAHKGEVKVLVRTVIPLPEKEEKELKETLQDILGKNKTILIEQKIDYSIMGGL 195
>02_05_0759 + 31545473-31546204
Length = 243
Score = 63.3 bits (147), Expect = 2e-10
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 2/147 (1%)
Frame = +1
Query: 232 YASALFSAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKI 411
YA+AL AS+ L+ +L + ++ +A + EF NPT+ R K + +A
Sbjct: 64 YATALSEVASENGTLEATVSDLEKLEKIFAEEA-IAEFFDNPTVPRDEKAQLIDEIAKSS 122
Query: 412 SLSPTTGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEVACEVVTAKPLDQAQRQNLEA 591
L N L ++ +NGR G + ++ F+ A EV T + Q + Q+L
Sbjct: 123 ELQAHVVNFLNVVVDNGRAGLMTQIVREFE---NAFNSLTGTEVATVTSVVQLESQDLAQ 179
Query: 592 ALKKF--LKGNETVQLTAKVDPSLIGG 666
++ L G + V++ ++DP LI G
Sbjct: 180 IAQQVQNLTGAKNVRVKTRIDPELIAG 206
>04_04_1251 +
32083164-32083284,32083448-32083614,32083719-32083721,
32084323-32084532,32084818-32084977,32085080-32085314,
32085405-32085555
Length = 348
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +1
Query: 535 CEVVTAKPLDQAQRQNLEAALKKFLKGNETVQLTAKVDPSLIGGMGCFNWG*ICRHE 705
C VVT P A+ + AA+ L G++ + T K+ GG+ + +CR E
Sbjct: 195 CPVVTVGPAPAAEAKPCVAAVLSLLSGDQEMISTVKLMEKATGGLMLVHVDDLCRAE 251
>07_03_1116 -
24084162-24084201,24084481-24084570,24084640-24085220,
24085653-24085822,24086006-24087074
Length = 649
Score = 29.9 bits (64), Expect = 2.8
Identities = 35/129 (27%), Positives = 50/129 (38%), Gaps = 6/129 (4%)
Frame = +1
Query: 220 LEGRYASALFSAASKTKALDIVEKELCQF--QQSIKTDAKLKEFIINPTIKRSMKVDALK 393
LE Y S A K KAL+ + E C+ ++ AK + F+ R V AL
Sbjct: 56 LEKSYKSKCDELAEKQKALEEKKAESCRLIAEKEANVSAKERAFLNQFQELRDTAVSALS 115
Query: 394 HVANKISLSPTTGNLLGLLAENG-RLGKLEAVINAFKIMMAAHRGEVAC---EVVTAKPL 561
V K + L G+L NG + K+ N + A+ A E A P+
Sbjct: 116 EVRQKYKV-----ELAGILDANGSKDKKVRTSTNDMNALCASEENTTASGLGEPSEASPV 170
Query: 562 DQAQRQNLE 588
D R L+
Sbjct: 171 DVKPRPVLK 179
>03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499
Length = 454
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 515 AAIIILKALMTASSFPKRPFSASNPSRLPVVG 420
AA+ +L+ A++ +RP + P RLPV+G
Sbjct: 15 AAVALLQLAKVAATMRRRPRTPPGPWRLPVIG 46
>03_02_0358 +
7784067-7784128,7784239-7785040,7785513-7785617,
7785835-7786194
Length = 442
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Frame = +1
Query: 517 HRGEVACEVV-----TAKPLDQAQR-QNLEAALKKFLKGNETVQLTAKVDPSLIGGM 669
H G VA V T P+D A R + +E+ L+ L+G T DPS G +
Sbjct: 155 HGGRVAALVFVRDEETGAPIDDAARVRRIESRLRHVLRGGARCARTVLADPSAAGNL 211
>01_06_1620 + 38697960-38698131,38698532-38700732
Length = 790
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 621 NCAAYS*SGSFIDWWHGLFQLGINM 695
+C+AYS +G+ + W++GL L NM
Sbjct: 398 SCSAYSYNGTCLVWYNGLINLQDNM 422
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,279,977
Number of Sequences: 37544
Number of extensions: 448195
Number of successful extensions: 1055
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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