Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_M10
(878 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80441-4|AAR25649.1| 228|Caenorhabditis elegans Atp synthase su... 157 1e-38
U80441-5|AAB37654.1| 207|Caenorhabditis elegans Atp synthase su... 155 5e-38
U28729-6|AAA68292.1| 549|Caenorhabditis elegans Phosphodiestera... 29 5.8
U28729-5|AAO38607.1| 674|Caenorhabditis elegans Phosphodiestera... 29 5.8
U28729-4|AAN60496.1| 599|Caenorhabditis elegans Phosphodiestera... 29 5.8
U28729-3|AAO38608.1| 612|Caenorhabditis elegans Phosphodiestera... 29 5.8
U28729-2|AAK77625.1| 626|Caenorhabditis elegans Phosphodiestera... 29 5.8
U28729-1|ABB88209.1| 673|Caenorhabditis elegans Phosphodiestera... 29 5.8
AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate rec... 29 5.8
AF078157-12|AAG24073.1| 338|Caenorhabditis elegans Hypothetical... 28 7.7
>U80441-4|AAR25649.1| 228|Caenorhabditis elegans Atp synthase
subunit protein 3,isoform b protein.
Length = 228
Score = 157 bits (380), Expect = 1e-38
Identities = 77/189 (40%), Positives = 123/189 (65%), Gaps = 2/189 (1%)
Frame = +1
Query: 109 IFLNKIMSALKGNLLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASKTKALDI 282
++L + + L+ R STS +A AQ+VK P+QV G+EGRYA+AL+SA K LD
Sbjct: 12 LYLTILHEKVMAQLMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKLDQ 71
Query: 283 VEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENG 462
+ +L + K + K +EF+++PT+K + K A++ ++ K+ L+ TGN LGLLAENG
Sbjct: 72 ISTDLNNVRSVYKDNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFLGLLAENG 131
Query: 463 RLGKLEAVINAFKIMMAAHRGEVACEVVTAKPLDQAQRQNLEAALKKFLKGNETVQLTAK 642
RL KLE+V+++F+ +M AHRGE+ +V +A+ L + ++ L AL K K + + +T
Sbjct: 132 RLNKLESVVSSFESIMRAHRGELFVQVTSAEELSSSNQKALSDALSKIGKSGQKLTVTYA 191
Query: 643 VDPSLIGGM 669
V PS++GG+
Sbjct: 192 VKPSILGGL 200
Score = 43.2 bits (97), Expect = 3e-04
Identities = 17/28 (60%), Positives = 25/28 (89%)
Frame = +2
Query: 671 VVSIGDKYVDMSVASKVKKYTELISAAV 754
VV+IGDKYVD+S+AS+VKKY + ++ A+
Sbjct: 201 VVTIGDKYVDLSIASRVKKYKDALATAI 228
>U80441-5|AAB37654.1| 207|Caenorhabditis elegans Atp synthase
subunit protein 3,isoform a protein.
Length = 207
Score = 155 bits (375), Expect = 5e-38
Identities = 76/176 (43%), Positives = 118/176 (67%), Gaps = 2/176 (1%)
Frame = +1
Query: 148 LLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELCQFQQSIK 321
L+ R STS +A AQ+VK P+QV G+EGRYA+AL+SA K LD + +L + K
Sbjct: 4 LMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKLDQISTDLNNVRSVYK 63
Query: 322 TDAKLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLGKLEAVINAFK 501
+ K +EF+++PT+K + K A++ ++ K+ L+ TGN LGLLAENGRL KLE+V+++F+
Sbjct: 64 DNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFLGLLAENGRLNKLESVVSSFE 123
Query: 502 IMMAAHRGEVACEVVTAKPLDQAQRQNLEAALKKFLKGNETVQLTAKVDPSLIGGM 669
+M AHRGE+ +V +A+ L + ++ L AL K K + + +T V PS++GG+
Sbjct: 124 SIMRAHRGELFVQVTSAEELSSSNQKALSDALSKIGKSGQKLTVTYAVKPSILGGL 179
Score = 43.2 bits (97), Expect = 3e-04
Identities = 17/28 (60%), Positives = 25/28 (89%)
Frame = +2
Query: 671 VVSIGDKYVDMSVASKVKKYTELISAAV 754
VV+IGDKYVD+S+AS+VKKY + ++ A+
Sbjct: 180 VVTIGDKYVDLSIASRVKKYKDALATAI 207
>U28729-6|AAA68292.1| 549|Caenorhabditis elegans Phosphodiesterase
protein 4, isoforma protein.
Length = 549
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +1
Query: 250 SAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALK-HVANKISLSPT 426
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 110 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 169
Query: 427 TGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEV 531
+G + + + + + + K+ +H G V
Sbjct: 170 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 204
>U28729-5|AAO38607.1| 674|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformd protein.
Length = 674
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +1
Query: 250 SAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALK-HVANKISLSPT 426
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 235 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 294
Query: 427 TGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEV 531
+G + + + + + + K+ +H G V
Sbjct: 295 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 329
>U28729-4|AAN60496.1| 599|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformc protein.
Length = 599
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +1
Query: 250 SAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALK-HVANKISLSPT 426
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 160 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 219
Query: 427 TGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEV 531
+G + + + + + + K+ +H G V
Sbjct: 220 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 254
>U28729-3|AAO38608.1| 612|Caenorhabditis elegans Phosphodiesterase
protein 4, isoforme protein.
Length = 612
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +1
Query: 250 SAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALK-HVANKISLSPT 426
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 173 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 232
Query: 427 TGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEV 531
+G + + + + + + K+ +H G V
Sbjct: 233 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 267
>U28729-2|AAK77625.1| 626|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformb protein.
Length = 626
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +1
Query: 250 SAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALK-HVANKISLSPT 426
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 187 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 246
Query: 427 TGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEV 531
+G + + + + + + K+ +H G V
Sbjct: 247 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 281
>U28729-1|ABB88209.1| 673|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformg protein.
Length = 673
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +1
Query: 250 SAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALK-HVANKISLSPT 426
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 234 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 293
Query: 427 TGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEV 531
+G + + + + + + K+ +H G V
Sbjct: 294 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 328
>AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 6, isoform a protein.
Length = 844
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 282 RGKRTLPVSTVYQN*CKAQGIHHQPDNKKKHEGRCVETCRQ*DQSFSYNW 431
R RTL V+++++ + I PD + KHEG CV+ + + +N+
Sbjct: 406 RESRTLKVTSIHEKPYVIEKI--MPDGRIKHEGFCVDLLDKLAEMLHFNY 453
>AF078157-12|AAG24073.1| 338|Caenorhabditis elegans Hypothetical
protein F25E5.2 protein.
Length = 338
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 241 ALFSAASKTKALDIVEKELCQFQQSIK 321
+LF+AA+KT + D+VE LC + S +
Sbjct: 134 SLFTAANKTISQDLVENGLCSKEDSFR 160
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,548,224
Number of Sequences: 27780
Number of extensions: 402234
Number of successful extensions: 1156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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