Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_M09
         (870 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068720-2|AAC17787.1|  346|Caenorhabditis elegans Seven tm rece...    28   10.0 

>AF068720-2|AAC17787.1|  346|Caenorhabditis elegans Seven tm
           receptor protein 240 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 14/62 (22%), Positives = 31/62 (50%)
 Frame = +3

Query: 534 TAVEKEMEKKGVLKTV*LIXKQTFVLNVNIFCIKLLKIKYLAFEGLYKMKAFKXNKTAIY 713
           T  E     + + K + ++    F +++ IF +  +  +YLA  G   +K++   K+ ++
Sbjct: 77  TFYENSSLPRWIYKVINVVFCTFFAVSMAIFALHFI-YRYLAVSGSSYVKSYSFGKSFVW 135

Query: 714 FF 719
           FF
Sbjct: 136 FF 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,438,059
Number of Sequences: 27780
Number of extensions: 277053
Number of successful extensions: 683
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)