Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_M08
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces...    87   2e-18
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    28   2.1  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   3.7  

>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 51

 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 35/51 (68%), Positives = 43/51 (84%)
 Frame = +2

Query: 68  MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 220
           M +HK+F  K+KLAK  +QNRPIPQW+R+RTGNT+ YN KRRHWRRTKL +
Sbjct: 1   MPSHKSFRTKQKLAKAARQNRPIPQWIRLRTGNTVHYNMKRRHWRRTKLNI 51


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 232 FTSLQLELCPSPVTPLSVISNSVSCAHPYPL 140
           ++S+ L    +P TP S  +N V CA P PL
Sbjct: 332 YSSIPLPAERNPKTPQSFSTNIVQCASPSPL 362


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 202  SPVTPLSVISNSVSCAHPYPLRNGS 128
            +P TP++V S++V+ AH Y    GS
Sbjct: 982  NPYTPIAVASSTVNPAHTYKPHGGS 1006


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,916,119
Number of Sequences: 5004
Number of extensions: 25272
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)