Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_M05
         (1108 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305     30   3.8  
06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909     30   3.8  

>07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305
          Length = 334

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 30/128 (23%), Positives = 40/128 (31%), Gaps = 4/128 (3%)
 Frame = +2

Query: 383 QRNRXRXXXGYXDXNHPSLPFXX--PLTMXNLXPXGXPAXLXTPHTXHXXXXFPXXSLSX 556
           ++N+ +   G  D   P  P     P       P   P  L +P   H    FP  S   
Sbjct: 191 KKNKQKDGGGEADAAAPEKPAAKAPPAAPAPSMPAPAPT-LSSPERPHGG--FPYYSPQP 247

Query: 557 PXXXPTXYPXYXFSX--APLPPLXXLLXPLXPXXQXXXXXXXXXXXXNPXPPXPXHLHXP 730
                  +P    S   AP P +     P+ P  Q             P PP P +L+ P
Sbjct: 248 VMSYNVAHPSASVSSYYAPTPVMSMQPTPMPPPPQMSYGYSPYPPMMMPPPPPPEYLYGP 307

Query: 731 XXPHXXPP 754
                 PP
Sbjct: 308 PGMRSSPP 315


>06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909
          Length = 627

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 15/55 (27%), Positives = 19/55 (34%)
 Frame = +2

Query: 605 PLPPLXXLLXPLXPXXQXXXXXXXXXXXXNPXPPXPXHLHXPXXPHXXPPFSXXP 769
           P P    L   L P  Q            +P PP P ++H P      PP +  P
Sbjct: 48  PPPQAQQLYSHLPPHQQPPHFAAHAMPSPSPPPPHPAYMHPPPFDSAPPPAAAPP 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,084,831
Number of Sequences: 37544
Number of extensions: 301266
Number of successful extensions: 1018
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3328000860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)