Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_M05
         (1108 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    31   1.1  
Z29094-11|CAI06056.1|  235|Caenorhabditis elegans Hypothetical p...    30   3.4  
U23484-5|AAK93844.1|  590|Caenorhabditis elegans Hypothetical pr...    29   5.9  

>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 22/74 (29%), Positives = 27/74 (36%)
 Frame = +2

Query: 533 FPXXSLSXPXXXPTXYPXYXFSXAPLPPLXXLLXPLXPXXQXXXXXXXXXXXXNPXPPXP 712
           +P  ++  P   P  YP +    AP PP      P  P  Q             P PP P
Sbjct: 87  YPQNAVPVPAPPPAPYPQHAVP-APAPP------PA-PYPQHAVPAPAPYQQQPPPPPPP 138

Query: 713 XHLHXPXXPHXXPP 754
            H + P  PH  PP
Sbjct: 139 PH-YPPPPPHYPPP 151


>Z29094-11|CAI06056.1|  235|Caenorhabditis elegans Hypothetical
           protein C07A9.12 protein.
          Length = 235

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 177 CCQTFQVFRTVIKYCMVIIIVPVLSFFVAKSI 272
           CC    +F ++    ++++IV VLS FV + +
Sbjct: 181 CCSNSTIFTSIFSLLVILLIVSVLSIFVIECV 212


>U23484-5|AAK93844.1|  590|Caenorhabditis elegans Hypothetical
           protein EEED8.16 protein.
          Length = 590

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 22/82 (26%), Positives = 38/82 (46%)
 Frame = -3

Query: 359 ESNVQYDDSNDSGVDTAXYGVQSEHXIK*DTLCHEEGKYWHDYNYHAVFYYRSKHLKSLA 180
           ESN  +DD N  G D    G++ E+ +   +   ++ KY+     H +    SK ++  A
Sbjct: 385 ESNASFDDKNQKGGDKLE-GIKLEYTLLLTSQLEDQRKYFEGLR-HDMEQTMSK-MEKTA 441

Query: 179 ASFAAPLDHYKTKNET*NKELQ 114
            +    L+H  T+  T  K L+
Sbjct: 442 YAQVENLEHQLTERSTELKSLK 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,955,010
Number of Sequences: 27780
Number of extensions: 229414
Number of successful extensions: 602
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2992200068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)