Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_M02
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb...    27   3.6  
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        27   4.8  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    27   4.8  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    26   8.4  

>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 281

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = -1

Query: 267 SLKKVLFINSKH--FSFASSMSLIWYI 193
           S+KK+LFI++ H   +  +S + IWYI
Sbjct: 189 SMKKLLFISNSHSIVALVASSASIWYI 215


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -1

Query: 261 KKVLFINSKHFSFASSMSLIWYILA 187
           +K+L+  +  F FAS+ S +W++++
Sbjct: 316 RKLLWARNGFFIFASAFSFVWFVIS 340


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
 Frame = +2

Query: 431 KSIDDIDEDLDTVKGESWK---KLLRTLIEAENLCNVFKYYXRGQVLDLERAHGAARAPR 601
           K++DD+ E   +++    K   KL R L E     N   Y  RG+  +L  ++       
Sbjct: 55  KTVDDMYEKQKSIRETYEKDINKLKRELEELGVEANTASYRNRGERSELAASNNQVTHID 114

Query: 602 SEHRSQTLRGQRAP 643
            EH SQT    + P
Sbjct: 115 QEHPSQTKSTSQPP 128


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +2

Query: 389 GEPDELVGFNIVLVKSIDDIDEDLDTVKGESWK-KLLRTLIEAENLCNVFKYYXRGQVLD 565
           G+P++LV  N     S +DI+  +   +  + + K+L+  IEA N    + Y  +GQ  D
Sbjct: 524 GKPEKLVIKNDKGRLSEEDIERMVKEAEEFAEEDKILKERIEARNTLENYAYSLKGQFDD 583

Query: 566 LERAHG 583
            E+  G
Sbjct: 584 DEQLGG 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,711
Number of Sequences: 5004
Number of extensions: 53229
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)