Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_M01
         (1383 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DC1448 Cluster: UPI0000DC1448 related cluster; n...    35   4.4  

>UniRef50_UPI0000DC1448 Cluster: UPI0000DC1448 related cluster; n=2;
            Rattus norvegicus|Rep: UPI0000DC1448 UniRef100 entry -
            Rattus norvegicus
          Length = 319

 Score = 35.1 bits (77), Expect = 4.4
 Identities = 23/77 (29%), Positives = 26/77 (33%)
 Frame = +3

Query: 1098 PLSSHXLPSXRXTXTPPXSXSSPXNXXSXXPSXXSXLSLHTXPPXPTXFSXFXPXXPPDS 1277
            PL     P      +PP    SP       P   S  SL + PP P+  S   P  PP  
Sbjct: 123  PLPPSPSPPSPPPPSPPPLPPSPSPPSLSSPLPPSPPSLSSPPPPPSPSSLSSPLPPPPP 182

Query: 1278 LSHXXPHXXTVPXXXXH 1328
            LS   P     P    H
Sbjct: 183  LSPSPPPPPPPPPPPSH 199


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 414,674,837
Number of Sequences: 1657284
Number of extensions: 2936506
Number of successful extensions: 3630
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3588
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 144562422963
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)