Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_L24
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    32   0.12 
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    29   1.2  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   4.7  
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    26   6.2  

>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 501 AFASNKRTADELFGDIEDIDFDDKEMPNKRFKSEEENDLEL 623
           A A+ +R +D LFG I+D   D +E+P+  F   E   + L
Sbjct: 326 AIAAGRRLSDRLFGGIKDAHLDYEEVPSVVFAHPEAGTIGL 366


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +3

Query: 183  TIRNSNKTDKMSDYPDPDEEYELMYADELELMQEQDALTDTNVVPKSKITKRSLDFSNHM 362
            T+   N   ++    +P   Y   Y+D L +MQ+ D L   +  P + + + S DF +H 
Sbjct: 832  TLSTDNFLIRVGSTNNPIVHYSANYSDTLLIMQDGD-LYINHSAPGAVLFRYSTDFQSHW 890

Query: 363  S 365
            S
Sbjct: 891  S 891


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +3

Query: 438  DADTETIINSQSSVILQPMEEAFASNKRTADELFGDIEDIDFDDKEMPNKRFKSEE-END 614
            +AD E + N  S V ++      ASN+R  D+L  + E+I     E+  KR ++++ ++ 
Sbjct: 989  EADIEHLKNKVSEVEVE-RNALLASNERLMDDLKNNGENIASLQTEIEKKRAENDDLQSK 1047

Query: 615  LELINKIIE 641
            L +++   E
Sbjct: 1048 LSVVSSEYE 1056


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 549 EDIDFDDKEMPNKRFKSEEENDLELINKIIEGRRLRQLL 665
           +DI  D +   NKRF+ ++       NK  +  RLR L+
Sbjct: 237 KDIPDDGESRDNKRFQEKKNRSERQKNKARDNARLRNLV 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,895
Number of Sequences: 5004
Number of extensions: 56002
Number of successful extensions: 184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)