Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_L24
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0135 + 908803-909059,913133-913187,913499-914047,914140-91...    30   2.8  
05_04_0126 + 18252594-18256922                                         29   6.6  
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555...    29   6.6  
05_02_0081 + 6432957-6433289,6433367-6433882,6434283-6434570           28   8.7  
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340...    28   8.7  
01_01_0342 + 2740699-2740839,2742021-2742085,2742221-2742332,274...    28   8.7  

>05_01_0135 +
           908803-909059,913133-913187,913499-914047,914140-914365,
           914446-914906
          Length = 515

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 564 QSLYLRYHRTIHLQYVCWMQRLLPLVAI 481
           + +YL+Y+ + + QY  W +RLL  +AI
Sbjct: 109 KQIYLQYYFSYYYQYYIWRRRLLVAIAI 136


>05_04_0126 + 18252594-18256922
          Length = 1442

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 498 EAFASNKRTADELFGDIEDIDFDDKEMPNKRFKSEEENDLELI-NKIIEGRR 650
           +AF     T DE++ +IE ++ DDK    KR   E     E + N  IEG +
Sbjct: 300 KAFQDKLNTHDEIWKEIEKMNIDDKIEEVKRKIGEVSGTTEEVKNNKIEGTK 351


>01_07_0112 -
           41149461-41151674,41151688-41153265,41154344-41155507,
           41155807-41156293,41156603-41156759,41157303-41157378
          Length = 1891

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 284 TRCSNRH*CS-SKIKNYQKKPRFFKSHVKPTSTIY 385
           ++ +N+  C  +++ NYQK+P+FFK       TI+
Sbjct: 670 SKANNKRYCRHAQLVNYQKQPKFFKDLPSKVRTIH 704


>05_02_0081 + 6432957-6433289,6433367-6433882,6434283-6434570
          Length = 378

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 489 PMEEAFASNKRTADELFGDIEDIDFDDKEMPN 584
           P   + + + R ADELFG + +I +   E+P+
Sbjct: 297 PYYRSSSEDDRNADELFGQVPEIQWSVPELPS 328


>03_06_0399 -
           33632811-33633107,33633236-33633385,33633705-33634029,
           33635315-33635982,33636967-33637212,33637405-33637545,
           33637807-33637856,33637943-33638060,33638304-33638910,
           33639339-33639463,33639813-33639869,33639952-33640023,
           33640100-33640232,33640305-33640428,33640522-33640576,
           33640672-33641322
          Length = 1272

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +3

Query: 486 QPMEEAFASNKRTADELFGDIEDIDF---DDKEMPNKRFKSEEEND----LELINKIIE 641
           +P++ A A +    D +  D  D++    DD +    RFK  EE+D     E+ N +IE
Sbjct: 432 EPLQRALAGDSCPDDAILKDFLDVEAEEEDDSDDDMMRFKDNEEDDGSDENEVFNDLIE 490


>01_01_0342 +
           2740699-2740839,2742021-2742085,2742221-2742332,
           2742388-2742435
          Length = 121

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = -1

Query: 257 VHKLIFFVRIWIVTHFVGFIRITYG*QLIIKKERYEVLKFLSYQHLFTI*FQ*FYIYALY 78
           + +L   V  WIV  F+G++++++   L + ++RYE +     QHL     Q   I  LY
Sbjct: 53  LRRLYLSVYNWIV--FIGWVQVSWSMILALLEKRYEAVYAAVEQHLLFA--QTAAIMELY 108

Query: 77  -FICKLLLQRTR 45
            F   LL++  R
Sbjct: 109 NFFVSLLMEIER 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,954,185
Number of Sequences: 37544
Number of extensions: 306135
Number of successful extensions: 720
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)