Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_L24
         (884 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094968-1|AAM11321.1|  874|Drosophila melanogaster SD07712p pro...    40   0.006
AF287273-1|AAL02426.1|  993|Drosophila melanogaster DNA replicat...    40   0.006
AE014134-661|AAN10380.2|  993|Drosophila melanogaster CG33122-PA...    38   0.014

>AY094968-1|AAM11321.1|  874|Drosophila melanogaster SD07712p
           protein.
          Length = 874

 Score = 39.5 bits (88), Expect = 0.006
 Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
 Frame = +3

Query: 465 SQSSVILQPMEEAFASNKRTADELFGDIEDIDFDDKEMPN-KRFKSEEENDLELINKIIE 641
           +Q++  LQ +     + +R   +LFGDI+D+  +  E P  K+ ++EE+ D E I +I+E
Sbjct: 23  NQAANQLQEVGLKNVNKRRLERDLFGDIDDLFHESYEDPMVKKARTEEQRDYEAIERILE 82

Query: 642 GRR 650
            RR
Sbjct: 83  LRR 85


>AF287273-1|AAL02426.1|  993|Drosophila melanogaster DNA replication
           accessory factorCutlet protein.
          Length = 993

 Score = 39.5 bits (88), Expect = 0.006
 Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
 Frame = +3

Query: 465 SQSSVILQPMEEAFASNKRTADELFGDIEDIDFDDKEMPN-KRFKSEEENDLELINKIIE 641
           +Q++  LQ +     + +R   +LFGDI+D+  +  E P  K+ ++EE+ D E I +I+E
Sbjct: 142 NQAANQLQEVGLKNVNKRRLERDLFGDIDDLFHESYEDPMVKKARTEEQRDYEAIERILE 201

Query: 642 GRR 650
            RR
Sbjct: 202 LRR 204



 Score = 37.5 bits (83), Expect = 0.024
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = +3

Query: 213 MSDYPDPDEEYELMYADELELMQE 284
           M  YPD +EE+EL Y DELEL+++
Sbjct: 1   MDQYPDENEEFELQYQDELELLED 24


>AE014134-661|AAN10380.2|  993|Drosophila melanogaster CG33122-PA
           protein.
          Length = 993

 Score = 38.3 bits (85), Expect = 0.014
 Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
 Frame = +3

Query: 513 NKRTAD-ELFGDIEDIDFDDKEMPN-KRFKSEEENDLELINKIIEGRR 650
           NKR  + +LFGDI+D+  +  E P  K+ ++EE+ D E I +I+E RR
Sbjct: 157 NKRRLERDLFGDIDDLFHESYEDPMVKKARTEEQRDHEAIERILELRR 204



 Score = 37.5 bits (83), Expect = 0.024
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = +3

Query: 213 MSDYPDPDEEYELMYADELELMQE 284
           M  YPD +EE+EL Y DELEL+++
Sbjct: 1   MDQYPDENEEFELQYQDELELLED 24


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,288,344
Number of Sequences: 53049
Number of extensions: 552792
Number of successful extensions: 1519
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1519
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4311772920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)