Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_L24
         (884 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.93 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   2.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.6  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 178 C*PYVILIKPTK*VTIQI 231
           C P V+++ PT+ +TIQI
Sbjct: 272 CEPQVVIVSPTRELTIQI 289


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 444 DTETIINSQSSVILQPMEEAFASNKRTADELFGDI 548
           D ETII   S   L+P +E  +  +RT  + + ++
Sbjct: 112 DIETIIRRNSRYPLRPPQEVISHYRRTRRDRYTNL 146


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 762  RYKSPPWYIVRHISFHIILEF 700
            R K PPW    H++  +I E+
Sbjct: 993  RRKEPPWLEGVHVTPELIYEY 1013


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,396
Number of Sequences: 438
Number of extensions: 3806
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)