Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_L22
         (932 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.019
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.26 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.54 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   6.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.7 bits (76), Expect = 0.019
 Identities = 18/47 (38%), Positives = 18/47 (38%)
 Frame = +1

Query: 631 PPXPXXXSXXPSPPPXXXXGGGGXXKIKXXXXPAPPXPPPPXXXXGG 771
           PP P      P PPP    G G          P PP PPPP    GG
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAG----------PPPPPPPPPAVSAGG 789



 Score = 31.1 bits (67), Expect = 0.23
 Identities = 21/68 (30%), Positives = 22/68 (32%)
 Frame = +3

Query: 564 PPPPPPXXXXXXXXXGGGGXXXPPXPPXXLXXPLPXPXXXXGGRGPXKNKXXXXPXXPPP 743
           PPPPPP                PP  P     P P P     G GP        P  PPP
Sbjct: 732 PPPPPP--AVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGP--------PPPPPP 781

Query: 744 PXSXXXXG 767
           P +    G
Sbjct: 782 PPAVSAGG 789



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +3

Query: 558 PXPPPPPPXXXXXXXXXGGGGXXXPPXPP 644
           P PPPPPP          G G   PP PP
Sbjct: 761 PPPPPPPPGV-------AGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 555 PPXPPPPPP 581
           PP PPPPPP
Sbjct: 775 PPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 461 PPPPPPXXXXKKKKKKKXXXGG 396
           PPPPPP    KK+K K     G
Sbjct: 24  PPPPPPPGYVKKRKNKTPAQSG 45



 Score = 26.2 bits (55), Expect(2) = 0.26
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 537 SXXPXXPPXPPPPP 578
           S  P  PP PPPPP
Sbjct: 3   SLPPGNPPPPPPPP 16



 Score = 23.0 bits (47), Expect(2) = 0.26
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 555 PPXPPPPPP 581
           P  PPPPPP
Sbjct: 21  PSQPPPPPP 29


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 21/71 (29%), Positives = 22/71 (30%)
 Frame = +3

Query: 555 PPXPPPPPPXXXXXXXXXGGGGXXXPPXPPXXLXXPLPXPXXXXGGRGPXKNKXXXXPXX 734
           PP PPPP            G      P PP       P P     G  P   +    P  
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPP-------PPPRSNAAGSIPLPPQGRSAP-P 362

Query: 735 PPPPXSXXXXG 767
           PPPP S    G
Sbjct: 363 PPPPRSAPSTG 373



 Score = 29.1 bits (62), Expect = 0.94
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +1

Query: 652 SXXPSPPPXXXXGGGGXXKIKXXXXPAPPXPPP 750
           S  P PPP       G   +      APP PPP
Sbjct: 334 SSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/69 (24%), Positives = 19/69 (27%), Gaps = 3/69 (4%)
 Frame = +3

Query: 555 PPXPPPPPPXXXXXXXXXGGGGXXXPPXPP---XXLXXPLPXPXXXXGGRGPXKNKXXXX 725
           PP PPP            G      PP PP         +P P        P   +    
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPS 371

Query: 726 PXXPPPPXS 752
               PPP S
Sbjct: 372 TGRQPPPLS 380



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 18/66 (27%), Positives = 19/66 (28%), Gaps = 2/66 (3%)
 Frame = +1

Query: 556 PPXPPX--PXXXXXXFXXXXGGGGXXXPPXPXXXSXXPSPPPXXXXGGGGXXKIKXXXXP 729
           PP PP   P                  PP P   S  PS PP           +      
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPP--SAPPSLPMGAPA 445

Query: 730 APPXPP 747
           APP PP
Sbjct: 446 APPLPP 451



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 17/61 (27%), Positives = 18/61 (29%)
 Frame = +3

Query: 564 PPPPPPXXXXXXXXXGGGGXXXPPXPPXXLXXPLPXPXXXXGGRGPXKNKXXXXPXXPPP 743
           PP PPP                PP PP         P     G+ P  N        PPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPP---------PSRRNRGKPPIGNGSSNSSLPPPP 340

Query: 744 P 746
           P
Sbjct: 341 P 341



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 473 KKKXPPPPPPXXXXKKK 423
           KK+ PPPPPP    + K
Sbjct: 308 KKRPPPPPPPSRRNRGK 324


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 546 PXXPPXPPPPPP 581
           P  PP PPPPPP
Sbjct: 942 PAFPPPPPPPPP 953



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 727 PAPPXPPPPXXXXGGG 774
           P PP PPPP     GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 24.6 bits (51), Expect(2) = 3.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 733 PPXPPPPXXXXGGGGR 780
           PP PPPP      GG+
Sbjct: 946 PPPPPPPPLVSAAGGK 961



 Score = 20.6 bits (41), Expect(2) = 3.5
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +1

Query: 727 PAPPXPPP 750
           P PP PPP
Sbjct: 905 PTPPPPPP 912


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 555 PPXPPPPPP 581
           PP PPPPPP
Sbjct: 306 PPPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 555 PPXPPPPPP 581
           PP PPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/52 (26%), Positives = 15/52 (28%)
 Frame = +1

Query: 613 GGGXXXPPXPXXXSXXPSPPPXXXXGGGGXXKIKXXXXPAPPXPPPPXXXXG 768
           G     PP P   S  P PP        G          +PP P  P    G
Sbjct: 267 GSQVNIPPPPATPSQPPRPPTNASTRSTGTSSSMAHSYDSPPSPSSPSDAYG 318


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/60 (30%), Positives = 19/60 (31%)
 Frame = +3

Query: 564  PPPPPPXXXXXXXXXGGGGXXXPPXPPXXLXXPLPXPXXXXGGRGPXKNKXXXXPXXPPP 743
            PP PPP           G    PP PP     P+P P     G  P        P  P P
Sbjct: 1189 PPVPPPSEAPPVPKPSVG---VPPVPPPSTAPPVPTP---SAGLPPVPVPTAKAPPVPAP 1242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,488
Number of Sequences: 5004
Number of extensions: 31813
Number of successful extensions: 534
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)