Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_L20
(1021 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 199 6e-52
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 199 6e-52
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 199 6e-52
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 85 2e-17
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 28 2.4
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo... 27 3.2
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 26 7.4
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 26 9.8
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 199 bits (485), Expect = 6e-52
Identities = 98/104 (94%), Positives = 102/104 (98%)
Frame = +2
Query: 164 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 343
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 344 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVWL 475
LLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV L
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSL 104
Score = 65.3 bits (152), Expect = 1e-11
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = +3
Query: 450 QARLISFGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 572
+A L+S LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 98 EAYLVS--LFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 199 bits (485), Expect = 6e-52
Identities = 98/104 (94%), Positives = 102/104 (98%)
Frame = +2
Query: 164 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 343
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 344 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVWL 475
LLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV L
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSL 104
Score = 65.3 bits (152), Expect = 1e-11
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = +3
Query: 450 QARLISFGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 572
+A L+S LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 98 EAYLVS--LFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 199 bits (485), Expect = 6e-52
Identities = 98/104 (94%), Positives = 102/104 (98%)
Frame = +2
Query: 164 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 343
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 344 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVWL 475
LLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV L
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSL 104
Score = 65.3 bits (152), Expect = 1e-11
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = +3
Query: 450 QARLISFGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 572
+A L+S LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 98 EAYLVS--LFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 85.0 bits (201), Expect = 2e-17
Identities = 49/89 (55%), Positives = 65/89 (73%), Gaps = 10/89 (11%)
Frame = +2
Query: 239 ARKSAPSTGG--VKKPH--RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQD--- 397
A+KS + G + +P RYRPGT ALREIR+YQ+ST+LLI++LPF R+VREI+ +
Sbjct: 2 AKKSLMAEPGDPIPRPRKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVA 61
Query: 398 -FKTD--LRFQSAAIGALQEASEAYLVWL 475
F TD LR+QS A+ LQEA+EA+LV L
Sbjct: 62 NFSTDVGLRWQSTALQCLQEAAEAFLVHL 90
Score = 60.1 bits (139), Expect = 5e-10
Identities = 27/30 (90%), Positives = 29/30 (96%)
Frame = +3
Query: 474 LFEDTNLCAIHAKRVTIMPKDIQLARRIRG 563
LFEDTNLCAIHAKRVTIM +D+QLARRIRG
Sbjct: 90 LFEDTNLCAIHAKRVTIMQRDMQLARRIRG 119
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 27.9 bits (59), Expect = 2.4
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +2
Query: 269 VKKPHRYRPGTVALRE-IRRYQKSTELLIRKLPFQRLVREIAQ--DFKTDLRF---QSAA 430
+ + HR + +L E + +++ S LLI P Q +RE+A DF +F +
Sbjct: 507 IDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEIN 566
Query: 431 IGALQEASEAYL 466
+ A E EAY+
Sbjct: 567 LEAPDEEQEAYI 578
>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +1
Query: 412 AFPVCRHRSSPGGKRGLSRLACSKTPTCVLFTPNV*PSCRRIFNLLD 552
A VC + S K S L C C+ PN PS R + + +D
Sbjct: 293 ALAVCNAQYSFPRKHPYSTLLCEIVEACLQREPNKRPSARELLSKID 339
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 26.2 bits (55), Expect = 7.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 159 KQWLVLNKQPVNLLEVKLRVNNLLQ 233
K++L L K PV L++ K N+L+
Sbjct: 12 KEYLALQKNPVELVDAKPATENILE 36
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 305 ALREIRRYQKSTELLIRKLPFQR 373
A RE+++ ++ EL++ LPFQR
Sbjct: 340 APREVKQIEQPKELVLNLLPFQR 362
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,569
Number of Sequences: 5004
Number of extensions: 40099
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 531251476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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