Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_L19
(892 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065... 141 8e-34
10_08_0323 + 16743358-16743566,16744536-16744704,16744834-167449... 133 2e-31
03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857... 127 1e-29
04_03_0535 - 16850704-16853001,16854055-16854115,16854228-168543... 29 5.0
02_04_0430 + 22834405-22834839 29 5.0
09_02_0423 + 9153088-9153181,9153281-9153378,9153532-9153708,915... 29 6.6
02_01_0076 + 540182-540583,541266-541475,541557-542018,542112-54... 28 8.7
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 28 8.7
11_08_0035 - 27838495-27838655,27838750-27838897,27838987-278391... 24 9.0
>01_07_0331 +
42804385-42804659,42806175-42806340,42806424-42806549,
42807142-42807207,42807645-42807698,42808843-42809019,
42809100-42809102
Length = 288
Score = 141 bits (341), Expect = 8e-34
Identities = 75/171 (43%), Positives = 98/171 (57%), Gaps = 4/171 (2%)
Frame = +1
Query: 184 HPLQNQWSLWFYDNDRNK----TWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYA 351
HPL++ W+ WF DN + K TW ++ + TF TVEDFW LY++I PS+L G D+
Sbjct: 52 HPLEHAWTFWF-DNPQGKSKQATWGSSIRPIHTFSTVEDFWSLYNNIHHPSKLVVGADFH 110
Query: 352 VFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAV 531
FK I P WED GG+W S + + D WL +L +IGE F+ DEICGAV
Sbjct: 111 CFKNKIEPKWEDPICANGGKWTFSCGRGKS----DTMWLHTLLAMIGEQFDYGDEICGAV 166
Query: 532 VNVRPKVDKIAIWTADAMKQHATIEIGKXLKEQLRDTRQDXXQVHRDTMVK 684
V+VR K ++IAIWT +A + A I IGK KE L VH D + K
Sbjct: 167 VSVRGKQERIAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVHWDILSK 217
>10_08_0323 +
16743358-16743566,16744536-16744704,16744834-16744959,
16745813-16745878,16745997-16746047
Length = 206
Score = 133 bits (321), Expect = 2e-31
Identities = 61/151 (40%), Positives = 87/151 (57%), Gaps = 3/151 (1%)
Frame = +1
Query: 184 HPLQNQWSLWFYDNDRNK---TWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAV 354
H L QW+ W+ + K W +L + TFDTVE+FW LY I PS++ D+ +
Sbjct: 30 HKLHRQWAFWYDIQSKPKPGAAWGTSLRKAYTFDTVEEFWGLYDQIFRPSKVTVNADFHL 89
Query: 355 FKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAVV 534
FK G+ P WED GG+W + +K T L+ WL+ ++ LIGE F+ S+EICG V
Sbjct: 90 FKAGVEPKWEDPECANGGKWTVPCSRK---TTLENMWLETLMALIGEQFDESEEICGVVA 146
Query: 535 NVRPKVDKIAIWTADAMKQHATIEIGKXLKE 627
+VR + DK+A+WT A + + IGK KE
Sbjct: 147 SVRQRGDKLALWTRTASNEAVQVNIGKKWKE 177
>03_02_0446 -
8567436-8567567,8567649-8567768,8569837-8569914,
8570018-8570122,8570214-8570306,8570464-8570619
Length = 227
Score = 127 bits (306), Expect = 1e-29
Identities = 57/154 (37%), Positives = 94/154 (61%), Gaps = 3/154 (1%)
Frame = +1
Query: 184 HPLQNQWSLWFYDND---RNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAV 354
HPL+ ++ LW+ R++++E+N+ ++ F TVE FW Y H+ P L D +
Sbjct: 49 HPLRRRFVLWYTRRTPGARSQSYEDNIKKIVDFSTVESFWVCYCHLTRPVSLPSPTDLHL 108
Query: 355 FKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAVV 534
FK+GIRP+WED AN+ GG+W+I +K T RFW D+VL+L+G+ + SD++CG V+
Sbjct: 109 FKEGIRPLWEDPANRSGGKWIIRFKK----TVSGRFWEDLVLVLVGDQLDYSDDVCGVVL 164
Query: 535 NVRPKVDKIAIWTADAMKQHATIEIGKXLKEQLR 636
+VR D +++W +A A + + +K L+
Sbjct: 165 SVRFNEDILSVWNRNASDHQAVMTLRDSIKRHLK 198
>04_03_0535 - 16850704-16853001,16854055-16854115,16854228-16854323,
16854394-16854521,16855016-16855067,16855182-16855274,
16855473-16855590,16856456-16856609,16857512-16857643,
16859136-16859216,16859353-16859507,16860118-16860343,
16860423-16860507,16860593-16860689,16861785-16861949,
16862046-16862121,16863041-16863103,16863193-16863359,
16863495-16863669,16863743-16863835,16864694-16864810,
16865589-16865778,16866092-16866126
Length = 1618
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 647 CRVSLSCSFSXFPISIVACCFIASAVQ 567
CR+S+ CS S FP + AC I + Q
Sbjct: 1304 CRLSIECSASTFPALLHACATIGTIEQ 1330
>02_04_0430 + 22834405-22834839
Length = 144
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3
Query: 431 FSRLISHLPPILLASSSHIGRM 366
FSR+ S LPP L + SHIGR+
Sbjct: 95 FSRVGSPLPPTLSSGGSHIGRI 116
>09_02_0423 +
9153088-9153181,9153281-9153378,9153532-9153708,
9153827-9153927,9154334-9154490
Length = 208
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 154 AEVPPEFLIKHPLQNQWSLWFYDNDRNKTWEE 249
AEV PE ++ HP +Q + Y D N +W E
Sbjct: 2 AEVKPEDMVHHPPMDQLQGFEYCIDSNPSWGE 33
>02_01_0076 +
540182-540583,541266-541475,541557-542018,542112-542222,
542309-542488,543083-543367,544581-544701,544802-544923
Length = 630
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 305 IILSYRQ--NFAKVMTMQYSSKAFVLCGKTMLTRWEEDGLSVLRKNNALL 448
++LS+ Q A ++ M + + F L GKT + W + S ++KNN L
Sbjct: 351 VLLSHAQMVELANILDMYFEDQ-FTLPGKTFYSNWNSEP-SKIKKNNGYL 398
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 328 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDL-DRFWLD 471
LR ++ + G R + E++ ++ +W + LE KQR L +R W D
Sbjct: 845 LRNEREFLARRMGSR-LTEEERERLFIKWQVPLEAKQRKLQLVNRLWTD 892
>11_08_0035 -
27838495-27838655,27838750-27838897,27838987-27839192,
27839291-27839972,27840074-27840247,27840963-27841181,
27841281-27841400,27841540-27841680,27841762-27841801,
27841969-27842129,27842506-27842589,27842659-27842721,
27842808-27842885,27842980-27842984,27843228-27843313,
27843354-27843544,27844089-27844166,27844255-27844365,
27844757-27844927,27845026-27845198,27845748-27845928
Length = 1090
Score = 23.8 bits (49), Expect(2) = 9.0
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = +2
Query: 299 CTIILSYRQNFAKVMTMQYSSKAFVLC 379
CT++ +R++ +++T+Q+S C
Sbjct: 290 CTLVTRHRKHADEILTLQFSQPDGTYC 316
Score = 22.6 bits (46), Expect(2) = 9.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 365 AFVLCGKTMLTRWEEDGLSVLRKN 436
A L GK +T WE+D +RKN
Sbjct: 352 ALALNGKD-ITEWEDDTDEYMRKN 374
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,855,317
Number of Sequences: 37544
Number of extensions: 337959
Number of successful extensions: 794
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -