Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_L17
         (840 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110479-3|CAB60312.2|  330|Caenorhabditis elegans Hypothetical ...    28   7.2  
AF024503-13|AAG24083.1|  347|Caenorhabditis elegans Hypothetical...    28   9.5  

>AL110479-3|CAB60312.2|  330|Caenorhabditis elegans Hypothetical
           protein Y105C5B.4 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = -3

Query: 121 INCFIVAISYFYLWTFISLKYYKVASQILRIPYSES 14
           +NC  + I+YFYL  F SLK  K  S+I   P S+S
Sbjct: 198 LNCLYLIIAYFYL--FYSLK--KRNSRIANFPVSKS 229


>AF024503-13|AAG24083.1|  347|Caenorhabditis elegans Hypothetical
           protein F31F4.15 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 38  DLRRDFVIFEANKGPQIKITNGYN 109
           D+R D + F  N GPQIK T   N
Sbjct: 95  DMREDHIRFIYNHGPQIKYTEAEN 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,270,111
Number of Sequences: 27780
Number of extensions: 136494
Number of successful extensions: 274
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)