Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_L14
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   4.7  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   8.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.2  

>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
 Frame = +3

Query: 534 FFHRLRPPDEH---HKNRRSSQ---RWRNPTGL*RYQAFPPGSSLVRSPVPTLPLTGIPV 695
           FF+ LR   +    H  +RSS      +N T        P G S  +SPV T PL   P 
Sbjct: 682 FFNTLRTVKDKSHVHDTQRSSDVNFSRQNGTRSHSPSVSPVGFSFDKSPVTTPPLPTAPA 741

Query: 696 PPFSLREA 719
           P  + R A
Sbjct: 742 PVITSRHA 749


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 196 IASQISQIKHFFHCILVVVCPNSSNVSYHVWIQLTLXK 83
           + S++S+IKH  +C L     NSS VS  V + L L +
Sbjct: 420 VNSELSRIKHLLNCFL-----NSSTVSLDVSMVLELLR 452


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 804 GVRAXSPAWSERPTPN*DTYSVSYEKSATLPEGRKAEQVSR*AA 673
           G R  +PA    P P  D  S++ E+   L E RK  + +  AA
Sbjct: 789 GSRYYAPAPQAEPEPKIDETSLTEEQKIQLEEARKQRKAADDAA 832


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,258,776
Number of Sequences: 5004
Number of extensions: 64677
Number of successful extensions: 165
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)