Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_L14
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 31 1.6
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644... 30 2.8
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350... 29 5.0
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 29 5.0
06_03_0218 + 18219956-18220555 29 6.6
02_05_0181 - 26522849-26522932,26523053-26523184,26523263-265233... 29 6.6
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.7
04_04_0900 + 29232365-29232931 28 8.7
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +1
Query: 526 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 684
CWR + T D Q + +KD P + PSC L+F P P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335
>01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,
6448164-6448243,6449045-6449129,6449221-6449312,
6449388-6449456,6449544-6449580,6449662-6449744,
6450427-6450873,6450978-6451014,6451101-6451158,
6451243-6451382,6451610-6451675,6451794-6451908,
6453261-6453299,6453482-6453543
Length = 1927
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = -1
Query: 802 GSCTQPSLERTTYTELRYLQREL*EKRHASRREKGGTGIPVS 677
GS P RTTYTEL +Q EL K + + G+PVS
Sbjct: 1116 GSRNMPKATRTTYTELLRMQ-ELKNKSNETIESSEYHGVPVS 1156
>01_07_0021 -
40533864-40534583,40534779-40534814,40534909-40535048,
40535837-40535922,40536430-40536653,40536770-40536865,
40538766-40538833,40539945-40540055,40540799-40540955
Length = 545
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +3
Query: 537 FHRLRPPDEHHKNRRSSQRWRNPTGL*RYQAFPPGSSLVRSPVPTLPLTGIPVP 698
F + PP EH S+ PT PP ++ P+P+ P G+PVP
Sbjct: 427 FEQPPPPPEHPPPPESTSPPPPPTSDPPPVPPPPPTTGSFMPIPSAPFAGLPVP 480
>01_01_0588 +
4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 29.1 bits (62), Expect = 5.0
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Frame = +1
Query: 502 PGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFP----LEAPSCALLFR 669
PG V RPR R S + ++D+ G T KD +P + P ++
Sbjct: 454 PGVV-RPRKRRKHCSS----NENQVDSWPSGFSTTTPMKDGLAYPDTMAVSNPLRRVILP 508
Query: 670 PCRLPGYLFRLSPFGKRGAFLIAHAVG 750
PCRL + LSPFG F +A G
Sbjct: 509 PCRLQENIISLSPFGLTRIFKSHNADG 535
>06_03_0218 + 18219956-18220555
Length = 199
Score = 28.7 bits (61), Expect = 6.6
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = -3
Query: 809 NGGFVHXAQLGANDLHRTEIPTA*AMRKAPRFPKGERRNRYPG--KRQGRNRRAHEGASR 636
NGG ++ A +T P R+ ERR G KR+GR R G R
Sbjct: 81 NGGLTEGEEVAARPREKTARPDGARARR-------ERRLEAAGAEKREGRRRGGSSGGLR 133
Query: 635 GKRLVS 618
GKR S
Sbjct: 134 GKRRAS 139
>02_05_0181 -
26522849-26522932,26523053-26523184,26523263-26523329,
26523800-26524186,26524259-26524360,26524983-26525132,
26525552-26525636,26525743-26525769,26525858-26526116,
26526659-26526751,26526921-26527013,26527122-26527289,
26527436-26527594,26528214-26528273,26528392-26528487
Length = 653
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 658 LLFRPCRLPGYLFRLSPFGKRGA 726
LL R C LP YL+ L+ F K+G+
Sbjct: 548 LLIRDCPLPFYLWHLTQFTKKGS 570
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 306 NESAN---ARGEAVCVLGALPLPRSLTRCAR 389
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>04_04_0900 + 29232365-29232931
Length = 188
Score = 28.3 bits (60), Expect = 8.7
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Frame = -1
Query: 784 SLERTTYTELRYLQREL*EKRHASR---REKGG---TGIPVSGRVGTGERTRELPG 635
++ERT E R + EK A R R +GG +GIP SGR G+G + + G
Sbjct: 86 AVERTAAVE-RVSEEAAVEKEAAERQWRRGRGGRRCSGIPASGRSGSGRLGKSMDG 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,655,269
Number of Sequences: 37544
Number of extensions: 534174
Number of successful extensions: 1714
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1711
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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