Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_L14
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    26   0.53 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   8.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   8.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 482 SHVLSCVIPLILWITVLPPLSELIPLAA 399
           S +LS V+ L+L   +LPP S ++PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 503 GLLLAFCSHVL-SCVIPLILWITVLPPLSELIPL 405
           G  ++ CS +L S  +  +L   ++PP S  IPL
Sbjct: 278 GEKVSLCSSILLSLTVFFLLLAEIIPPTSLAIPL 311


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 299 EKTSHTSTLNLKHKMNAIVVV 237
           E    T TLNLKH   A++V+
Sbjct: 56  EDAEDTQTLNLKHLRAAVLVL 76


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 619 DTRRFPLEAPSCALLFRPCR 678
           + R FP++  SC L+   C+
Sbjct: 165 ELRNFPMDRQSCPLILGSCK 184


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 642 SSLVRSPVPTLPLTGIPVPPFSLREAWRFSHSS 740
           + ++  PV   P TG+   PF + E    SH +
Sbjct: 841 AGVIYPPVIGTPSTGMMYKPFLIPEQTSISHEN 873


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 482 SHVLSCVIPLILWITVLPPLSELIPL 405
           S +LS  +  +L   ++PP S ++PL
Sbjct: 277 SILLSLTVFFLLLAEIIPPTSLVVPL 302


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 784 WAXCTNPPFSPTAAP 828
           W    +PP+SP  AP
Sbjct: 264 WDVLPHPPYSPDLAP 278


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 299 EKTSHTSTLNLKHKM 255
           ++  H+STL++ HKM
Sbjct: 238 DENRHSSTLDIDHKM 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,372
Number of Sequences: 438
Number of extensions: 5777
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)