Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_L13
         (1185 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0046 + 25943183-25943590                                         31   1.8  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    30   4.1  
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    30   4.1  
01_06_1377 + 36764461-36765339                                         30   4.1  
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680...    29   5.4  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    29   7.1  
11_01_0359 - 2731522-2732346                                           29   9.4  

>01_06_0046 + 25943183-25943590
          Length = 135

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 379 PXXFXPPPXXFFLXPPPPQKXXFFCXGXXPPPP 477
           P    PPP  ++  PPPP    ++     PPPP
Sbjct: 52  PPALPPPPPYYYYSPPPP---AYYPGSYCPPPP 81


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 394 PPPXXFFLXPPPPQKXXFFCXGXXPPPP 477
           PPP  ++  PPPP           PPPP
Sbjct: 84  PPPQMYYQPPPPPPPYGVNSSQPPPPPP 111



 Score = 29.1 bits (62), Expect = 7.1
 Identities = 24/93 (25%), Positives = 28/93 (30%), Gaps = 5/93 (5%)
 Frame = +1

Query: 214 FSXXPPPFXXPFXPRWEKKK--GXXXPXVXFPXXXFXPRGGXKXXXXPPXX---NXLENX 378
           F   PPP   P+ P   ++   G   P    P     P         PP     N     
Sbjct: 18  FPPQPPPMN-PYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGP 76

Query: 379 PXXFXPPPXXFFLXPPPPQKXXFFCXGXXPPPP 477
           P    PPP       PPP    +      PPPP
Sbjct: 77  PQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPP 109



 Score = 29.1 bits (62), Expect = 7.1
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +1

Query: 394 PPPXXFFLXPPPPQKXXFFCXGXXPPPP 477
           PPP   +  PPPP           PPPP
Sbjct: 83  PPPPQMYYQPPPPPPPYGVNSSQPPPPP 110


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +1

Query: 349 PPXXNXLENXPXXFXPPPXXFFLXPPPPQKXXFFCXGXXPPPP 477
           PP  N     P    PPP      PPPP           PPPP
Sbjct: 282 PPPPNAPMGMPPRIPPPPVGGTQPPPPPPPLANGPPRSIPPPP 324


>01_06_1377 + 36764461-36765339
          Length = 292

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
 Frame = +1

Query: 379 PXXFXPPPXXFFLXPPPPQ--KXXFFCXG---XXPPPP 477
           P  F PPP   +  PPPPQ     ++  G     PPPP
Sbjct: 169 PYYFPPPPPPAYSAPPPPQYGSEQYYRSGGYYSAPPPP 206


>12_01_0752 -
           6798938-6799312,6799628-6799768,6800257-6800325,
           6800407-6800454,6801740-6801836,6801922-6802001,
           6802099-6802170,6802335-6802429,6802853-6802934,
           6805476-6805853
          Length = 478

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 394 PPPXXFFLXPPPPQKXXFFCXGXXPPPPH 480
           PP    F   PPP +  FF     PPPPH
Sbjct: 48  PPVIRVFAAAPPPPRAAFFA----PPPPH 72


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 15/43 (34%), Positives = 16/43 (37%)
 Frame = +1

Query: 349 PPXXNXLENXPXXFXPPPXXFFLXPPPPQKXXFFCXGXXPPPP 477
           PP      N P    PPP      PPPP     +     PPPP
Sbjct: 549 PPPPPPSGNKPAFSPPPPPP--PPPPPPLPQSNYASSQPPPPP 589


>11_01_0359 - 2731522-2732346
          Length = 274

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +1

Query: 394 PPPXXFFLXPPPPQKXXFFCXGXXPPPPH 480
           PPP      PPPP           PPPPH
Sbjct: 44  PPPHSHSHPPPPPPHAYHHHHYPPPPPPH 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,859,583
Number of Sequences: 37544
Number of extensions: 273623
Number of successful extensions: 3178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2903
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3608292120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)