Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_L13
(1185 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 33 0.39
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 33 0.39
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.8
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 30 3.7
AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical ... 30 3.7
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 33.1 bits (72), Expect = 0.39
Identities = 21/82 (25%), Positives = 25/82 (30%), Gaps = 1/82 (1%)
Frame = +1
Query: 190 PWXXVXXXFSXXPPPFXXPFXPRWEKKKGXXXPXVXFPXXXFXPRGGXKXXXXPPXXNXL 369
P+ + F PPP F P G P P G + PP
Sbjct: 285 PYAMMPPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMF 344
Query: 370 ENXP-XXFXPPPXXFFLXPPPP 432
P F PPP F+ P P
Sbjct: 345 RGGPYPPFFPPPPPHFMRPSSP 366
Score = 31.9 bits (69), Expect = 0.91
Identities = 22/69 (31%), Positives = 23/69 (33%), Gaps = 9/69 (13%)
Frame = +1
Query: 301 PXXXFXPRGGXKXXXXPPXXNXLENXPXXFXPPPXXFFLXPP----PPQKXXFFCXG--- 459
P F P PP P F PPP F + PP PP F G
Sbjct: 291 PPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPYP 350
Query: 460 --XXPPPPH 480
PPPPH
Sbjct: 351 PFFPPPPPH 359
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 33.1 bits (72), Expect = 0.39
Identities = 21/82 (25%), Positives = 25/82 (30%), Gaps = 1/82 (1%)
Frame = +1
Query: 190 PWXXVXXXFSXXPPPFXXPFXPRWEKKKGXXXPXVXFPXXXFXPRGGXKXXXXPPXXNXL 369
P+ + F PPP F P G P P G + PP
Sbjct: 285 PYAMMPPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMF 344
Query: 370 ENXP-XXFXPPPXXFFLXPPPP 432
P F PPP F+ P P
Sbjct: 345 RGGPYPPFFPPPPPHFMRPSSP 366
Score = 31.9 bits (69), Expect = 0.91
Identities = 22/69 (31%), Positives = 23/69 (33%), Gaps = 9/69 (13%)
Frame = +1
Query: 301 PXXXFXPRGGXKXXXXPPXXNXLENXPXXFXPPPXXFFLXPP----PPQKXXFFCXG--- 459
P F P PP P F PPP F + PP PP F G
Sbjct: 291 PPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPYP 350
Query: 460 --XXPPPPH 480
PPPPH
Sbjct: 351 PFFPPPPPH 359
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 2.8
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 394 PPPXXFFLXPPPPQKXXFFCXGXXPPPP 477
PPP PPPP F G PPPP
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 29.9 bits (64), Expect = 3.7
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = +1
Query: 325 GGXKXXXXPPXXNXLENXPXXFXPPPXXFFLXPPPPQKXXFFCXGXXPPPP 477
GG P + P PPP PPPP F G PPPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF--KGGPPPPP 788
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 2.8
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 394 PPPXXFFLXPPPPQKXXFFCXGXXPPPP 477
PPP PPPP F G PPPP
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 29.9 bits (64), Expect = 3.7
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = +1
Query: 325 GGXKXXXXPPXXNXLENXPXXFXPPPXXFFLXPPPPQKXXFFCXGXXPPPP 477
GG P + P PPP PPPP F G PPPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF--KGGPPPPP 788
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 2.8
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 394 PPPXXFFLXPPPPQKXXFFCXGXXPPPP 477
PPP PPPP F G PPPP
Sbjct: 345 PPPPGGCPPPPPPPPPGGFKGGPPPPPP 372
Score = 29.9 bits (64), Expect = 3.7
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = +1
Query: 325 GGXKXXXXPPXXNXLENXPXXFXPPPXXFFLXPPPPQKXXFFCXGXXPPPP 477
GG P + P PPP PPPP F G PPPP
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF--KGGPPPPP 371
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.9 bits (64), Expect = 3.7
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Frame = +1
Query: 379 PXXFXPPP-XXFFLXPPP-----PQKXXFFCXGXXPPPP 477
P F PPP F+ PPP P F G PPPP
Sbjct: 61 PSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPP 99
>AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical
protein W08E12.6 protein.
Length = 215
Score = 29.9 bits (64), Expect = 3.7
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +1
Query: 379 PXXFXPPPXXFFLXPPPPQKXXFFCXGXXPPPP 477
P PPP F+ PPPP C G PPP
Sbjct: 43 PCFDCPPPAPIFVAPPPPP-----CFGPACPPP 70
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,529,186
Number of Sequences: 27780
Number of extensions: 141903
Number of successful extensions: 1311
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3245116438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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