Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_L12
         (988 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.33 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.44 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   1.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   7.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
 Frame = -2

Query: 711 PTPGPLAXKNXXXXPPPXSG-RXTXPPXXKXXPPPPPPP 598
           P P P         PPP  G     PP     PPPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPP-----PPPPPPP 783



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 14/39 (35%), Positives = 15/39 (38%)
 Frame = -2

Query: 714 APTPGPLAXKNXXXXPPPXSGRXTXPPXXKXXPPPPPPP 598
           +P P P A       P P       P      PPPPPPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIP--VPPPAPIMGGPPPPPPP 767


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
 Frame = -2

Query: 669 PPPXS---GRXTXPPXXKXXPPPPPP 601
           PPP S   G    PP  +  PPPPPP
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -2

Query: 714 APTPGPLAXKNXXXXPPPXSGRXTXPPXXKXXPPPPPPP 598
           AP   PL   +    PP  +G    PP     P PPP P
Sbjct: 443 APAAPPLPP-SAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
 Frame = -2

Query: 693 AXKNXXXXPPPXSGRXTXPPXX------KXXPPPPPPP 598
           A K     PPP S R    P           PPPPPPP
Sbjct: 306 ANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = -2

Query: 666 PPXSGRXTXPPXX--KXXPPPPPPP 598
           PP S R +       K  PPPPPPP
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPP 317


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
 Frame = -2

Query: 714 APT---PGPLAXKNXXXXPPPXSGRXTXPPXXKXXPPPPPPP 598
           APT   P  +        PP  +   T  P     PPPPPPP
Sbjct: 155 APTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 669 PPPXSGRXTXPPXXKXXPPPPPPP 598
           PPP       PP     PPPPPPP
Sbjct: 10  PPPPPPPGFEPPSQ---PPPPPPP 30


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -2

Query: 666  PPXSGRXTXPPXXKXXPPPPPPP 598
            PP     T PP     PPPP  P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAP 1721



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -2

Query: 669  PPPXSGRXTXPPXXKXXPPPPPPP 598
            PP  S     PP     PPP  PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPP 1722


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
 Frame = -2

Query: 714  APTPGPLAXKNXXXXPP---PXSGRXTXPPXXKXXPPPPPP 601
            AP+  P   K     PP   P SG    P      PP PPP
Sbjct: 1154 APSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,048,747
Number of Sequences: 5004
Number of extensions: 10710
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)