Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_L10
         (899 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117202-17|CAB55081.1|  192|Caenorhabditis elegans Hypothetical...    67   2e-11
L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembl...    28   7.9  
AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein...    28   7.9  

>AL117202-17|CAB55081.1|  192|Caenorhabditis elegans Hypothetical
           protein Y47D3A.21 protein.
          Length = 192

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 25/56 (44%), Positives = 38/56 (67%)
 Frame = +3

Query: 165 RDLSMGPREGVTYPIKVQYCGNCSMPIEYCEYYPEYDKCKQWLEKNLPTEFEKVKL 332
           + L+ GP +GV+YP+K+ YCG CSMP EYC+Y  + D C+ W  +N P   E +++
Sbjct: 10  QSLAPGPIDGVSYPLKMVYCGQCSMPPEYCDYSGQTDVCRAWATQNAPELLEGLEI 65



 Score = 52.0 bits (119), Expect = 6e-07
 Identities = 23/31 (74%), Positives = 26/31 (83%)
 Frame = +2

Query: 467 KKSVTVVSGLSTFDIDLKVAAKFFGPKXACG 559
           KKSVTV+ GL+TFDIDLKVA+K F  K ACG
Sbjct: 119 KKSVTVIKGLATFDIDLKVASKLFAQKFACG 149


>L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembly
           abnormal protein 4 protein.
          Length = 808

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 255 EYYPEYDKCKQWLEKNLPTEFEKVKLD 335
           E   E+ KCK+ +E+    +FEK+K D
Sbjct: 367 ELIEEFKKCKKGVEEEFEKKFEKIKED 393


>AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein
           protein.
          Length = 808

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 255 EYYPEYDKCKQWLEKNLPTEFEKVKLD 335
           E   E+ KCK+ +E+    +FEK+K D
Sbjct: 367 ELIEEFKKCKKGVEEEFEKKFEKIKED 393


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,028,023
Number of Sequences: 27780
Number of extensions: 215276
Number of successful extensions: 454
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)