Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_L09
(933 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 35 0.096
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 35 0.096
AL110490-3|CAB54449.1| 892|Caenorhabditis elegans Hypothetical ... 31 0.89
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 31 1.6
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 29 3.6
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 6.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 6.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 6.3
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 25 6.7
Z78013-8|CAN99686.1| 373|Caenorhabditis elegans Hypothetical pr... 28 8.3
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 28 8.3
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 28 8.3
U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astaci... 28 8.3
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 8.3
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 34.7 bits (76), Expect = 0.096
Identities = 21/69 (30%), Positives = 22/69 (31%)
Frame = +1
Query: 727 PPXXGGGXXXXPPXXXXXXGXXXKKKXXPPPPPXXFFXXXXXXXPFFFXXPPPPXXXXXX 906
PP G PP G PPPPP F P PPPP
Sbjct: 290 PPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF------GPPGMGGMPPPPPPGMRY 343
Query: 907 XXXVXPPPP 933
+ PPPP
Sbjct: 344 PGGMPPPPP 352
Score = 29.1 bits (62), Expect = 4.8
Identities = 25/98 (25%), Positives = 27/98 (27%), Gaps = 6/98 (6%)
Frame = +1
Query: 658 PPXGGXXGXXXXXPLXXFFXXXXPPXXG------GGXXXXPPXXXXXXGXXXKKKXXPPP 819
PP G P + PP G G PP G PPP
Sbjct: 278 PPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPP 337
Query: 820 PPXXFFXXXXXXXPFFFXXPPPPXXXXXXXXXVXPPPP 933
PP + P PPPP PPPP
Sbjct: 338 PPGMRY-------PGGMPPPPPPRYPSAGPGMYPPPPP 368
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 34.7 bits (76), Expect = 0.096
Identities = 21/69 (30%), Positives = 22/69 (31%)
Frame = +1
Query: 727 PPXXGGGXXXXPPXXXXXXGXXXKKKXXPPPPPXXFFXXXXXXXPFFFXXPPPPXXXXXX 906
PP G PP G PPPPP F P PPPP
Sbjct: 300 PPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF------GPPGMGGMPPPPPPGMRY 353
Query: 907 XXXVXPPPP 933
+ PPPP
Sbjct: 354 PGGMPPPPP 362
Score = 29.1 bits (62), Expect = 4.8
Identities = 25/98 (25%), Positives = 27/98 (27%), Gaps = 6/98 (6%)
Frame = +1
Query: 658 PPXGGXXGXXXXXPLXXFFXXXXPPXXG------GGXXXXPPXXXXXXGXXXKKKXXPPP 819
PP G P + PP G G PP G PPP
Sbjct: 288 PPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPP 347
Query: 820 PPXXFFXXXXXXXPFFFXXPPPPXXXXXXXXXVXPPPP 933
PP + P PPPP PPPP
Sbjct: 348 PPGMRY-------PGGMPPPPPPRYPSAGPGMYPPPPP 378
>AL110490-3|CAB54449.1| 892|Caenorhabditis elegans Hypothetical
protein Y48B6A.3 protein.
Length = 892
Score = 31.5 bits (68), Expect = 0.89
Identities = 17/58 (29%), Positives = 21/58 (36%)
Frame = -1
Query: 933 RGGGXXXPXXXXXXXGGGGGXKKKRXXXXXXXKKXXGGGGGGXFFFXXPPXXXXXXGG 760
+GGG GGGGG ++ GGGGG + PP GG
Sbjct: 827 QGGGYGGGYGGGGGGGGGGGGGSYHQPYNQDQRRGGRGGGGGPPGYQRPPYRGGGGGG 884
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/70 (28%), Positives = 20/70 (28%), Gaps = 1/70 (1%)
Frame = +1
Query: 727 PPXXG-GGXXXXPPXXXXXXGXXXKKKXXPPPPPXXFFXXXXXXXPFFFXXPPPPXXXXX 903
PP G PP G PPPPP P PPPP
Sbjct: 491 PPMPSINGHAPNPPPPPPLLGIAPMSTNAPPPPPMPGMAPLSTGAP----TPPPPPPVGM 546
Query: 904 XXXXVXPPPP 933
PPPP
Sbjct: 547 ANGGPPPPPP 556
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = -2
Query: 932 GGGGXTXXXXXXXXXGGGGXXKKKGXXXXXXKKKXXGGGGG 810
GGGG GGGG + +G + GGGGG
Sbjct: 221 GGGGGGYGSGGGWGGGGGGRDRDRGGWGGGGGGRGYGGGGG 261
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 6.3
Identities = 21/69 (30%), Positives = 21/69 (30%)
Frame = +1
Query: 727 PPXXGGGXXXXPPXXXXXXGXXXKKKXXPPPPPXXFFXXXXXXXPFFFXXPPPPXXXXXX 906
PP GG PP G PPPPP P PPPP
Sbjct: 720 PPITGGPPPPPPP------GGLPPITGGPPPPPPP-----GGLPPISGGPPPPPPPPGGC 768
Query: 907 XXXVXPPPP 933
PPPP
Sbjct: 769 PPPPPPPPP 777
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 6.3
Identities = 21/69 (30%), Positives = 21/69 (30%)
Frame = +1
Query: 727 PPXXGGGXXXXPPXXXXXXGXXXKKKXXPPPPPXXFFXXXXXXXPFFFXXPPPPXXXXXX 906
PP GG PP G PPPPP P PPPP
Sbjct: 720 PPITGGPPPPPPP------GGLPPITGGPPPPPPP-----GGLPPISGGPPPPPPPPGGC 768
Query: 907 XXXVXPPPP 933
PPPP
Sbjct: 769 PPPPPPPPP 777
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 6.3
Identities = 21/69 (30%), Positives = 21/69 (30%)
Frame = +1
Query: 727 PPXXGGGXXXXPPXXXXXXGXXXKKKXXPPPPPXXFFXXXXXXXPFFFXXPPPPXXXXXX 906
PP GG PP G PPPPP P PPPP
Sbjct: 303 PPITGGPPPPPPP------GGLPPITGGPPPPPPP-----GGLPPISGGPPPPPPPPGGC 351
Query: 907 XXXVXPPPP 933
PPPP
Sbjct: 352 PPPPPPPPP 360
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 24.6 bits (51), Expect(2) = 6.7
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = +3
Query: 876 PPPPXXXXXXXXGGXPPPP 932
PPPP G PPPP
Sbjct: 782 PPPPSFRGGRGGHGGPPPP 800
Score = 22.2 bits (45), Expect(2) = 6.7
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +3
Query: 726 PPPXXGGGXXXXPPP 770
PPP GG PPP
Sbjct: 771 PPPPRGGMHHMPPPP 785
>Z78013-8|CAN99686.1| 373|Caenorhabditis elegans Hypothetical
protein F15B9.10 protein.
Length = 373
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -1
Query: 825 GGGGGGXFFFXXPPXXXXXXGGXXXXPPPXXGGG 724
G GGGG P GG PPP GGG
Sbjct: 248 GRGGGGNQNRQQVPTNPMGGGGGYPQPPPQQGGG 281
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +1
Query: 811 PPPPPXXFFXXXXXXXPFFFXXPPPPXXXXXXXXXVXPPPP 933
PPPPP F PPPP PPPP
Sbjct: 613 PPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPP 653
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +1
Query: 811 PPPPPXXFFXXXXXXXPFFFXXPPPPXXXXXXXXXVXPPPP 933
PPPPP F PPPP PPPP
Sbjct: 439 PPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPP 479
>U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astacin
protease protein33 protein.
Length = 644
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +1
Query: 814 PPPPXXFFXXXXXXXPFFFXXPPPPXXXXXXXXXVXPPPP 933
PPPP FF P PPPP PPPP
Sbjct: 24 PPPPDWFFPG-----PLRPWGPPPPWHRNRGPPPFGPPPP 58
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +1
Query: 811 PPPPPXXFFXXXXXXXPFFFXXPPPPXXXXXXXXXVXPPPP 933
PPPPP P PPPP PPPP
Sbjct: 1357 PPPPPPPTMSKAPTGVP--LPVPPPPPLFSPSMILPPPPPP 1395
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,771,707
Number of Sequences: 27780
Number of extensions: 281157
Number of successful extensions: 1097
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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