Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_L07
         (915 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   4.6  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   4.6  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   4.6  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   6.1  
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    29   6.1  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    28   8.1  

>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/38 (34%), Positives = 14/38 (36%)
 Frame = +3

Query: 801 PPPXXXXPXSXPPXXXPPXXPPXXXXPFXXXPXSXXPS 914
           PPP    P + PP   PP  PP         P    PS
Sbjct: 140 PPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPS 177


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +1

Query: 802 PPPXXPXXSXXPPPXXPPXXXPXXSXLSXXXPXXXFLP 915
           PPP  P  +  PPP  PP   P  +      P    LP
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLP 752



 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +1

Query: 754 PXXXXPXXXXXXSXXXPPPXXPXXSXXPPPXXPP 855
           P    P      S   PPP  P     PPP  PP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +1

Query: 802 PPPXXPXXSXXPPPXXPPXXXPXXSXLSXXXPXXXFLP 915
           PPP  P  +  PPP  PP   P  +      P    LP
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLP 752



 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +1

Query: 754 PXXXXPXXXXXXSXXXPPPXXPXXSXXPPPXXPP 855
           P    P      S   PPP  P     PPP  PP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +1

Query: 802 PPPXXPXXSXXPPPXXPPXXXPXXSXLSXXXPXXXFLP 915
           PPP  P  +  PPP  PP   P  +      P    LP
Sbjct: 298 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLP 335



 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +1

Query: 754 PXXXXPXXXXXXSXXXPPPXXPXXSXXPPPXXPP 855
           P    P      S   PPP  P     PPP  PP
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 359


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +3

Query: 801 PPPXXXXPXSXPPXXXPPXXPPXXXXPFXXXPXSXXPS 914
           PPP    P   PP    P  PP    P    P    PS
Sbjct: 46  PPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMPS 83


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 21/78 (26%), Positives = 22/78 (28%)
 Frame = -3

Query: 880 GXXXXGGXXGGXXXGGXEXGXXXXGGGXXKXGXXXXXXXXXXGXXGXXXIXXXPGGXXXX 701
           G    GG  GG   GG   G    GGG    G          G  G   +   PGG    
Sbjct: 92  GGYGQGGYGGGGDFGGGMGGGGYGGGGYG-GGGDGGGGYGGYGGGGYGGMGGGPGGYGMG 150

Query: 700 XXXXXGXXXXXXGXXXGG 647
                G      G   GG
Sbjct: 151 GYGGGGGGGGDFGGYGGG 168


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +3

Query: 786 PFXXXPPPXXXXPXSXPPXXXPPXXPP 866
           P    PPP    P   PP   PP  PP
Sbjct: 61  PAQFCPPPPICPPPPPPPMPCPPPPPP 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,336,630
Number of Sequences: 27780
Number of extensions: 101604
Number of successful extensions: 828
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)