Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_L05
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   390   e-111
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    24   2.2  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    24   2.2  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   6.6  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   6.6  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   8.7  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   8.7  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   8.7  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  390 bits (960), Expect = e-111
 Identities = 178/208 (85%), Positives = 194/208 (93%)
 Frame = +3

Query: 69  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 248
           MGISRDHWHKRRATGGKR PIRKKRK+ELGRPAANT+LGPQRIH+VR+RGGN KYRALRL
Sbjct: 1   MGISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRL 60

Query: 249 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 428
           DTGNFSWGSEC+TRKTRIIDVVYNASNNELVRTKTLVKNAIV +DATPFRQWYE HY LP
Sbjct: 61  DTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLP 120

Query: 429 LGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPG 608
           LGRK+GAKLTEAEE ++NKKRS+K   KY ARQR AKVE ALEEQF TGR+LAC++SRPG
Sbjct: 121 LGRKRGAKLTEAEEEVLNKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACISSRPG 180

Query: 609 QCGRADGYILEGKELEFYLRKIKSKRAK 692
           QCGR DGYILEGKELEFY+R+IKSK+AK
Sbjct: 181 QCGREDGYILEGKELEFYMRRIKSKKAK 208


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 377 YNNCILDKGLCT 342
           Y NC+LD+G CT
Sbjct: 46  YVNCLLDQGPCT 57


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 377 YNNCILDKGLCT 342
           Y NC+LD+G CT
Sbjct: 46  YVNCLLDQGPCT 57


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 377 YNNCILDKGLCTHQ 336
           Y  C+LD+G CT++
Sbjct: 43  YIKCMLDEGPCTNE 56


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 377 YNNCILDKGLCTHQ 336
           Y  C+LD+G CT++
Sbjct: 43  YIKCMLDEGPCTNE 56


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 410 LIPLPEWSCIYYNNC 366
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 410 LIPLPEWSCIYYNNC 366
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 410 LIPLPEWSCIYYNNC 366
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,529
Number of Sequences: 438
Number of extensions: 4385
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)