Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_L03
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    30   0.38 
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    28   2.0  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   2.7  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   2.7  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    27   4.6  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   6.1  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    26   8.1  

>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -3

Query: 282 SPDHDL*FFQLHHWVLSHIPPNICHYQHFQKTYLFDYKQNKASLLIDK--KLKQFSCLKK 109
           S D  L  F LH + L     ++  Y H  +  +    Q+   L++D+   L +FS L K
Sbjct: 265 SGDSSLKSFSLHFFALQFFSTSLIQYTHICRKCVITILQSYQQLIVDQPANLLKFSLLSK 324

Query: 108 SACYLL 91
              + L
Sbjct: 325 KVSHFL 330


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -2

Query: 577 TIIFILKTH*QLINHYSHSGTISPIHFRYGGLPFFMGTDITS 452
           T++ IL T   L   Y  SGT +P  FR+ GL   + T  TS
Sbjct: 768 TLLRILTTRCMLSAEYFCSGTFAPPDFRHYGLASPIYTHFTS 809


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/47 (31%), Positives = 29/47 (61%)
 Frame = +3

Query: 246  DEVGRTIGHGLVKNKLAACVNSIPGITSIYEWKNEINEDKETLLMIK 386
            DE+ R +  G+V NK +A  +S+    ++YE+   + ++KET+  +K
Sbjct: 1810 DELCRRLSLGIVANKQSASQSSLIFCYNVYEF---VVKEKETVAALK 1853


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 240 VLSHIPPNICHYQHFQKTYLFDYKQNKASLLIDKKLKQ 127
           +LSH PPNI  Y  FQK YL  +   K  +L+     Q
Sbjct: 840 LLSHYPPNII-YATFQK-YLSSFINRKFGVLLSSSFIQ 875


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +3

Query: 354  NEDKETLLMIKTRTSQVDKLTEYVRSNHPYEVCEVISVPIKNG 482
            N + + LL +    +   ++ EY+     Y+V E+  + I+NG
Sbjct: 1017 NANLQNLLFLTAIKADKSRVMEYIDKLDKYDVDEIAEIAIENG 1059


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +3

Query: 342  KNEINEDKETLL-MIKTRTSQVDKLTEYVRSNHPYEVCEV 458
            K E NE  ++L   I T+ +++DKLT+Y+ S++  E+ E+
Sbjct: 973  KAEFNEQCKSLQETIVTKDAELDKLTKYI-SDYKTEIQEM 1011


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 60  LSLSGHKSQYLVNNMLISLNRKTVLTFYLSIVRPCFVYSQTN 185
           L LS  K   L+N+    +N+K  L  +L +V P F  S ++
Sbjct: 587 LELSESKLASLLNSYQSFINKKEHLYSFLQLVEPSFAKSDSS 628


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,594
Number of Sequences: 5004
Number of extensions: 52721
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)