Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_L03
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46242-6|CAA86327.3|  115|Caenorhabditis elegans Hypothetical pr...    75   5e-14
AC024208-2|AAF36055.1|  204|Caenorhabditis elegans Hypothetical ...    32   0.62 
Z68006-3|CAA91997.2|  633|Caenorhabditis elegans Hypothetical pr...    31   0.82 
U58762-3|AAM15611.1|  331|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>Z46242-6|CAA86327.3|  115|Caenorhabditis elegans Hypothetical
           protein F35G12.7 protein.
          Length = 115

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 36/91 (39%), Positives = 55/91 (60%)
 Frame = +3

Query: 240 PNDEVGRTIGHGLVKNKLAACVNSIPGITSIYEWKNEINEDKETLLMIKTRTSQVDKLTE 419
           P+ EV  T+    V   LAAC N IP +TS+Y+W+ +I ED+E ++++KT  S+V++L+ 
Sbjct: 16  PSKEVAMTVARTTVTEALAACANVIPEVTSVYKWQGKIEEDQEHVVILKTVESKVEELSA 75

Query: 420 YVRSNHPYEVCEVISVPIKNGNPPYLKWIGD 512
            VRS HP E     ++ I    P +  WI D
Sbjct: 76  RVRSLHPAETPCFFTLAIDKITPDFGGWIVD 106


>AC024208-2|AAF36055.1|  204|Caenorhabditis elegans Hypothetical
           protein Y75B7B.2 protein.
          Length = 204

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 342 KNEINEDKETLLMIKTRTSQVDKLTEYVRSNHPY-EVCEVISVP 470
           KN I     TLL  +T+T + + LT+ +  N  Y ++C++  +P
Sbjct: 19  KNGIKNGNHTLLCYETKTEEQNPLTKLIEDNVEYSKLCQLCKIP 62


>Z68006-3|CAA91997.2|  633|Caenorhabditis elegans Hypothetical
           protein K09C8.4 protein.
          Length = 633

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 243 WVLSHIPPNICHYQHFQKTYLFDYKQNKASLLIDKK 136
           W  SH+P NI  +    +TY+ +Y++N     + KK
Sbjct: 515 WPSSHVPTNISKWIKSNRTYMVNYEKNYEPYFVIKK 550


>U58762-3|AAM15611.1|  331|Caenorhabditis elegans Hypothetical
           protein T27F7.2c protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
 Frame = -3

Query: 249 HHWVL-SHIPPNICHYQHFQKTYLFDYKQNKASLLIDKKLKQF----SCLKKSACYLLNI 85
           HH VL SH+P  + H+  +QKT   ++KQ  A   +++ L+ F    + L K   Y L +
Sbjct: 251 HHSVLESHLPCTL-HFVQWQKT---NFKQLAAMSTVERPLRTFNRHSTALTKVRLYYLFV 306

Query: 84  DF 79
           +F
Sbjct: 307 EF 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,537,436
Number of Sequences: 27780
Number of extensions: 291004
Number of successful extensions: 1090
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)