Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_L02
         (910 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317           33   0.41 
01_03_0005 + 11568545-11569119,11569179-11569191                       31   0.96 
12_02_1007 - 25248653-25249078,25249956-25250021,25250108-252502...    29   5.1  
03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621     29   6.7  
01_01_0083 + 631196-631675                                             29   6.7  
07_01_0080 + 587674-588510                                             28   8.9  
05_01_0142 - 940421-940701,941262-941574                               28   8.9  
04_03_0801 - 19828175-19828770,19828913-19828994                       28   8.9  
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    28   8.9  
01_06_1226 - 35518981-35519295,35519876-35520745                       28   8.9  

>02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317
          Length = 291

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +3

Query: 507 GGGGXKKXXPPPPPXXKXXFXPPP 578
           GG   K   PPPPP  K  F PPP
Sbjct: 102 GGRTAKPYRPPPPPRKKPQFQPPP 125



 Score = 29.5 bits (63), Expect = 3.9
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 508 GGGXXKKXXPPPPXXKKXXXXPPP 579
           GG   K   PPPP  KK    PPP
Sbjct: 102 GGRTAKPYRPPPPPRKKPQFQPPP 125


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -1

Query: 598 GXXXXPP---GGGXKXFFXXGGGGGXXFXXPPPP 506
           G    PP   GGG    +  GGGGG  +  PPPP
Sbjct: 110 GIYYPPPTGGGGGGGGGWQQGGGGGGAYPTPPPP 143


>12_02_1007 -
           25248653-25249078,25249956-25250021,25250108-25250260,
           25250961-25251336,25252001-25252143
          Length = 387

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 507 GGGGXKKXXPPPPPXXKXXFXPPP 578
           GGGG      PPPP       PPP
Sbjct: 62  GGGGASSFDQPPPPVSYHRLSPPP 85


>03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621
          Length = 388

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 18/54 (33%), Positives = 19/54 (35%)
 Frame = +2

Query: 533 PPPPPXXKKXFXXPPRGXXXXPLXXKXXXGXPPXXFFXFFFXXXKKXXXPXPPP 694
           PPPPP  K     PPR         K   G PP           +K   P PPP
Sbjct: 196 PPPPPLEKDAPPQPPRPQEVHHRPTKSYTGNPPQPL--------EKDASPQPPP 241


>01_01_0083 + 631196-631675
          Length = 159

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -1

Query: 583 PPGGGXKXFFXXGGGGGXXFXXPPPP 506
           PP GG       GGGGG  +  PPPP
Sbjct: 93  PPAGGG------GGGGGFNYPAPPPP 112


>07_01_0080 + 587674-588510
          Length = 278

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 507 GGGGXKKXXPPPPPXXKXXFXPPP 578
           GG G  +  PPPPP       PPP
Sbjct: 83  GGDGMFRRPPPPPPPPPSSGSPPP 106


>05_01_0142 - 940421-940701,941262-941574
          Length = 197

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/58 (25%), Positives = 21/58 (36%)
 Frame = +1

Query: 247 GAPPXXGFXXXFFVFPPXXXPPFFXSPPXXPXXFSXXGGGSXXKKGXXEXXXXPPXXG 420
           G PP  G+    +  PP   PP   + P  P  +    G    + G  +    PP  G
Sbjct: 28  GYPPHQGYPPQGYPPPPGAYPPPPGAYPPPPGAYPPPPGAYPPQHGYPQPGGYPPPGG 85


>04_03_0801 - 19828175-19828770,19828913-19828994
          Length = 225

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 507 GGGGXKKXXPPPPPXXKXXFXPPP 578
           GGGG KK    PPP       PPP
Sbjct: 183 GGGGCKKPCCSPPPCPWQPVCPPP 206


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
 Frame = +3

Query: 501 PXGGGGXKKXXPP--PPPXXKXXFXPPPGGXXXXP 599
           P G GG  +  PP  PPP  +    PPP      P
Sbjct: 258 PNGSGGPPRPPPPQVPPPPPQAPPPPPPNAPMGMP 292


>01_06_1226 - 35518981-35519295,35519876-35520745
          Length = 394

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 547 GGGGGXXFXXPPPP 506
           GGGGG  F  PPPP
Sbjct: 19  GGGGGSVFPGPPPP 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,360,529
Number of Sequences: 37544
Number of extensions: 411689
Number of successful extensions: 2198
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1605
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)