Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_L02
         (910 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77662-15|CAI79240.1|  255|Caenorhabditis elegans Hypothetical p...    30   2.0  
AC006636-3|AAF39799.1|  139|Caenorhabditis elegans Ground-like (...    29   6.1  
AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    28   8.0  
AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical...    28   8.0  
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    28   8.0  
AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like pro...    28   8.0  

>Z77662-15|CAI79240.1|  255|Caenorhabditis elegans Hypothetical
           protein F47B8.14 protein.
          Length = 255

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 577 GGGXKXFFXXGGGGGXXFXXPPPP 506
           GGG   +   GGGGG     PPPP
Sbjct: 23  GGGGGGYSGGGGGGGDAAPPPPPP 46


>AC006636-3|AAF39799.1|  139|Caenorhabditis elegans Ground-like (grd
           related) protein27 protein.
          Length = 139

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 555 FXXGGGGGXFFXXPPPXXGCCWXXKKKK 472
           F  GGGGG     PPP   C    +KK+
Sbjct: 22  FGMGGGGGCGCGAPPPPPACGCGGRKKR 49


>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 510 GGGXKKXXPPPPPXXKXXFXPPP 578
           GGG     P PPP     F PPP
Sbjct: 654 GGGSSMPMPVPPPGGLGGFMPPP 676


>AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical
           protein Y113G7B.23 protein.
          Length = 789

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 502 PXGGGXXKKXXPPPPXXKKXXXXPPPGGXXXXP 600
           P GGG   +  PPPP  ++    PPP G    P
Sbjct: 673 PPGGG---QGPPPPPQGQQYYGGPPPPGQPYGP 702


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 510 GGGXKKXXPPPPPXXKXXFXPPP 578
           GGG     P PPP     F PPP
Sbjct: 654 GGGSSMPMPVPPPGGLGGFMPPP 676


>AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like
           protein protein.
          Length = 789

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 502 PXGGGXXKKXXPPPPXXKKXXXXPPPGGXXXXP 600
           P GGG   +  PPPP  ++    PPP G    P
Sbjct: 673 PPGGG---QGPPPPPQGQQYYGGPPPPGQPYGP 702


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,551,591
Number of Sequences: 27780
Number of extensions: 229778
Number of successful extensions: 1181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)