Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_K24
         (1104 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D55DA8 Cluster: PREDICTED: similar to CG12908-PA...    38   0.35 
UniRef50_UPI00003BFA45 Cluster: PREDICTED: similar to Nidogen/en...    36   1.9  
UniRef50_Q172X3 Cluster: Nidogen; n=1; Aedes aegypti|Rep: Nidoge...    35   3.2  
UniRef50_Q04901 Cluster: Entactin/nidogen; n=1; Halocynthia rore...    35   3.2  

>UniRef50_UPI0000D55DA8 Cluster: PREDICTED: similar to CG12908-PA,
           isoform A; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to CG12908-PA, isoform A - Tribolium castaneum
          Length = 1320

 Score = 38.3 bits (85), Expect = 0.35
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +2

Query: 188 SEVPSPEVXLNVPIVFYDETYXXVXVNXHGVLTFHRGSPS 307
           ++V SPE+ L VP+VFY   +  + VN +G ++F    P+
Sbjct: 40  NDVSSPEIKLKVPVVFYGTKFNSIFVNSNGFVSFQTEIPN 79


>UniRef50_UPI00003BFA45 Cluster: PREDICTED: similar to
           Nidogen/entactin CG12908-PA, isoform A; n=1; Apis
           mellifera|Rep: PREDICTED: similar to Nidogen/entactin
           CG12908-PA, isoform A - Apis mellifera
          Length = 1263

 Score = 35.9 bits (79), Expect = 1.9
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 200 SPEVXLNVPIVFYDETYXXVXVNXHGVLTFHR 295
           S E  L  PI FYD+ +  + VN +GVL+F R
Sbjct: 55  SAETILKTPIAFYDQIFNSIFVNGNGVLSFAR 86


>UniRef50_Q172X3 Cluster: Nidogen; n=1; Aedes aegypti|Rep: Nidogen -
           Aedes aegypti (Yellowfever mosquito)
          Length = 1298

 Score = 35.1 bits (77), Expect = 3.2
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 206 EVXLNVPIVFYDETYXXVXVNXHGVLTF 289
           E+ L+VP  FY E Y  V +N +G+LTF
Sbjct: 46  EIQLDVPAHFYSEKYEFVYINTNGILTF 73


>UniRef50_Q04901 Cluster: Entactin/nidogen; n=1; Halocynthia
           roretzi|Rep: Entactin/nidogen - Halocynthia roretzi (Sea
           squirt)
          Length = 1161

 Score = 35.1 bits (77), Expect = 3.2
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 185 GSEVPSPEVXLNVPIVFYDETYXXVXVNXHGVLT 286
           G    SP+  L++PIVFYD+ Y  V V+  G +T
Sbjct: 37  GDSESSPQQKLSMPIVFYDQKYDSVTVHTDGFIT 70


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 387,210,428
Number of Sequences: 1657284
Number of extensions: 3725507
Number of successful extensions: 4367
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4366
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 107747421395
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)