Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_K20
(933 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce... 149 6e-37
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 72 1e-13
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 48 1e-06
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 42 9e-05
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 38 0.002
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 36 0.006
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 29 1.2
>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 204
Score = 149 bits (361), Expect = 6e-37
Identities = 64/121 (52%), Positives = 95/121 (78%)
Frame = +1
Query: 139 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 318
MSI+ YNGG+ VAM G++CVAIA+D R G+Q+ +++ NFPKVF MG Y+GL GLATD
Sbjct: 1 MSIMEYNGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDV 60
Query: 319 QTVFQRLKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPY 498
QT+++ ++++NLY+ +E R ++PKTF+ ++S+ LYE+RFGPYF PV+AG+ DN P+
Sbjct: 61 QTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVS-NDNTPF 119
Query: 499 V 501
+
Sbjct: 120 I 120
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 72.1 bits (169), Expect = 1e-13
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Frame = +1
Query: 157 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNF-PKVFQMGPTLYVGLPGLATDTQTVFQ 333
NGG VA+ G +A D R + ++T F P+V ++G L +G G D + +
Sbjct: 12 NGGTTVAIAGDGFAILAGDTR-SVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVK 70
Query: 334 RLKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLD 477
R++ R++LY R M ++ + M+ LLY +RF PY++ +AG+D
Sbjct: 71 RIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGID 118
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 48.4 bits (110), Expect = 1e-06
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Frame = +1
Query: 160 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 339
G +V+A+K D V IA D + + ++ ++G VG G +D Q + QRL
Sbjct: 43 GSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQI-QRL 101
Query: 340 KFRMNLYE--LKENRMMRPKTFSAMLSNLLYERR--FGPYFIEPVIAGLDPYDNQPYV 501
++ + E + ++P LS +LY RR PY+ + ++AG+D + +PYV
Sbjct: 102 LEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYV 159
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 42.3 bits (95), Expect = 9e-05
Identities = 23/92 (25%), Positives = 45/92 (48%)
Frame = +1
Query: 160 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 339
G + A++ +D V +A D R + A + K+ Q+ ++ G A DTQTV L
Sbjct: 24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83
Query: 340 KFRMNLYELKENRMMRPKTFSAMLSNLLYERR 435
K+ +++Y ++ T + + S + Y+ +
Sbjct: 84 KYYLSMYRIQFGHDPSVHTAATLASEMCYQNK 115
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 38.3 bits (85), Expect = 0.002
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Frame = +1
Query: 160 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 339
G +A++G +C+ I +++ + Q VS NF K+ + + + GL D + + +
Sbjct: 30 GTTAIALRGNECIVIGVERKNVPKLQNVS-NFQKIAMVDNHVCLAFAGLNADARILIDKA 88
Query: 340 KFRMNLYELKENRMMRPKTFSAMLSNLL--YERRFG--PYFIEPVIAGLDPYDNQPYV 501
+ ++L + + + ++ + Y + G P+ + +IAG D DN P V
Sbjct: 89 RVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRV 146
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 36.3 bits (80), Expect = 0.006
Identities = 23/90 (25%), Positives = 37/90 (41%)
Frame = +1
Query: 157 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQR 336
+G +A + Q + + D R S KV ++ P L L G A D Q
Sbjct: 60 HGTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETV 119
Query: 337 LKFRMNLYELKENRMMRPKTFSAMLSNLLY 426
L L++L+ ++ S +LSN+ Y
Sbjct: 120 LGMECRLHQLRNKELISVSAASKILSNITY 149
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 163 GAVVAMKGQD-CVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLAT 312
GA+ +D VA A D G+ S + +VF++G L VG+ G T
Sbjct: 407 GALFKFDTEDEVVAWANDSPVGLAGYLFSKDISRVFRVGEALQVGMVGCNT 457
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,568
Number of Sequences: 5004
Number of extensions: 42865
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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