Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_K20
(933 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0903 - 25816395-25816493,25816695-25816779,25817390-258174... 159 3e-39
02_01_0614 - 4599035-4599083,4599209-4599303,4599410-4599494,460... 151 6e-37
09_04_0656 + 19267392-19267432,19267530-19267637,19269114-192691... 63 3e-10
08_02_1353 + 26335306-26335448,26336025-26336106,26336322-263364... 63 4e-10
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 38 0.009
09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341 38 0.015
08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323 37 0.026
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 32 0.57
06_03_0023 + 15558890-15559117,15559229-15560134 29 5.3
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 29 7.0
>06_03_0903 -
25816395-25816493,25816695-25816779,25817390-25817479,
25818566-25818673,25818771-25818952,25819032-25819216,
25820812-25820971
Length = 302
Score = 159 bits (386), Expect = 3e-39
Identities = 72/121 (59%), Positives = 98/121 (80%)
Frame = +1
Query: 139 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 318
MSI YNG AVVAM G++C AIA+D+R G+Q QTV+T+F +VF++ LY+GL GLATD
Sbjct: 114 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDA 173
Query: 319 QTVFQRLKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPY 498
QT++QRL FR LY+L+E R M+P+TF++++S LLYE+RFGPYF +PVIAGL DN+P+
Sbjct: 174 QTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGE-DNEPF 232
Query: 499 V 501
+
Sbjct: 233 I 233
>02_01_0614 -
4599035-4599083,4599209-4599303,4599410-4599494,
4600107-4600196,4600772-4600879,4600983-4601197
Length = 213
Score = 151 bits (367), Expect = 6e-37
Identities = 68/122 (55%), Positives = 96/122 (78%)
Frame = +1
Query: 136 NMSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATD 315
++ I YNG AVVAM G++C AIA+D+R G+Q QTV+T+F +VF++ LY+GL GLATD
Sbjct: 9 SLQIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATD 68
Query: 316 TQTVFQRLKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQP 495
QT++QRL FR LY+L+E R M+P+ F++++S LLYE+RFGPYF +PVIAGL D +P
Sbjct: 69 AQTLYQRLVFRHKLYQLREERDMKPQAFASLVSALLYEKRFGPYFCQPVIAGLGDND-EP 127
Query: 496 YV 501
++
Sbjct: 128 FI 129
>09_04_0656 +
19267392-19267432,19267530-19267637,19269114-19269195,
19269637-19269766,19269882-19270024,19270198-19270284,
19270384-19270458
Length = 221
Score = 63.3 bits (147), Expect = 3e-10
Identities = 32/107 (29%), Positives = 53/107 (49%)
Frame = +1
Query: 157 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQR 336
NGG VA+ G D +A D R + ++ + K+ ++ + G D + + +
Sbjct: 12 NGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKALHKN 71
Query: 337 LKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLD 477
L R LY+ + N+ M + +LSN LY +RF PY+ V+ GLD
Sbjct: 72 LAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLD 118
>08_02_1353 +
26335306-26335448,26336025-26336106,26336322-26336451,
26336486-26336548,26336549-26336691,26336827-26336913,
26337014-26337088
Length = 240
Score = 62.9 bits (146), Expect = 4e-10
Identities = 33/107 (30%), Positives = 51/107 (47%)
Frame = +1
Query: 157 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQR 336
NGG VA+ G D +A D R + +S + K+ + + G D + + +
Sbjct: 10 NGGTCVAVAGADYCVVAADTRLSVGYSILSRDSSKIAHLADKCVLASSGFQGDVKALQRN 69
Query: 337 LKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLD 477
L + LYE N+ M + +LSN LY +RF PY+ V+ GLD
Sbjct: 70 LTAKELLYEHNHNKKMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLD 116
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 38.3 bits (85), Expect = 0.009
Identities = 27/106 (25%), Positives = 43/106 (40%)
Frame = +1
Query: 160 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 339
G +V + QD V + D R N K+ M P +Y G A DT+ V +
Sbjct: 38 GTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 97
Query: 340 KFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLD 477
++ L+ R R T +L + L+ + G V+ G+D
Sbjct: 98 SSQLQLHRYATGRESRVVTSLTLLKSHLFSYQ-GHVSAALVLGGVD 142
>09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341
Length = 249
Score = 37.5 bits (83), Expect = 0.015
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Frame = +1
Query: 160 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 339
G A V ++G D V + +K+ + Q S + K+ + + + GL D + + R
Sbjct: 30 GNAAVGVRGSDTVVLGVEKKSTPKLQD-SRSVRKIASLDTHIALACAGLKADARVLINRA 88
Query: 340 KFRMNLYELKENRMMRPKTFSAMLSNLL--YERRFG--PYFIEPVIAGLDPYDNQP 495
+ + L + + + ++ L Y + G P+ + +I G DPY ++P
Sbjct: 89 RVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTDKP 144
>08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323
Length = 319
Score = 36.7 bits (81), Expect = 0.026
Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Frame = +1
Query: 160 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 339
G A V ++G D V + +K+ + Q S + K+ + + + GL D + + R
Sbjct: 100 GNAAVGVRGTDTVVLGVEKKSTPKLQD-SRSMRKIASLDTHIALACAGLKADARVLINRA 158
Query: 340 KFRMNLYELKENRMMRPKTFSAMLSNLL--YERRFG--PYFIEPVIAGLDPYDNQP 495
+ + L + + + ++ L Y + G P+ + +I G DPY +P
Sbjct: 159 RVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTEKP 214
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 32.3 bits (70), Expect = 0.57
Identities = 21/109 (19%), Positives = 47/109 (43%)
Frame = +1
Query: 160 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 339
G +V + V +A D R + K+ Q+ +YV G A DTQ + + +
Sbjct: 25 GTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADTQVISEYV 84
Query: 340 KFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYD 486
++ ++ + ++ + K + ++ L Y+ + ++ G D Y+
Sbjct: 85 RYFLHQHTIQLGQPATVKVAANLIRLLAYQNK-NMLQAGMIVGGWDKYE 132
>06_03_0023 + 15558890-15559117,15559229-15560134
Length = 377
Score = 29.1 bits (62), Expect = 5.3
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -2
Query: 203 MATQSWPFMATTAPPLYASIDILVI 129
++T +WPF+A A L S+D +++
Sbjct: 4 LSTAAWPFLAAVAAALLCSVDAVIV 28
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 28.7 bits (61), Expect = 7.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 162 GCGSRHEGPRLCGHRY*QAVW 224
GCG R + PRL G Q VW
Sbjct: 159 GCGPRRDAPRLVGRAVRQEVW 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,107,162
Number of Sequences: 37544
Number of extensions: 250124
Number of successful extensions: 491
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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