Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_K20
         (933 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta...   137   1e-32
L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome bet...    44   2e-04
AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome co...    44   2e-04
AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome be...    38   0.010
Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical pr...    36   0.055
Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical pr...    34   0.13 
U64855-3|AAB04982.1|  447|Caenorhabditis elegans Hypothetical pr...    29   6.3  
AF016451-1|AAB66002.2|  294|Caenorhabditis elegans Serpentine re...    28   8.3  

>U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta
           subunit protein 3 protein.
          Length = 204

 Score =  137 bits (331), Expect = 1e-32
 Identities = 62/121 (51%), Positives = 87/121 (71%)
 Frame = +1

Query: 139 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 318
           MSI++Y GG VVAM G +CV IA+D R G Q  T++T+  KV ++   +YVGL G  +D 
Sbjct: 1   MSIMSYTGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDA 60

Query: 319 QTVFQRLKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPY 498
           +TV +++ FR NLYEL+ENR ++P+  S M+SNL Y+ RFG YF EP++AGLD   N+PY
Sbjct: 61  RTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDD-TNKPY 119

Query: 499 V 501
           +
Sbjct: 120 I 120


>L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome beta
           subunit protein 6 protein.
          Length = 258

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
 Frame = +1

Query: 160 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQ-MGPTLYVGLPGLATDTQTVFQR 336
           GG+  A+ G++   +A+D R       + T   +  Q +   + +   G   D   + + 
Sbjct: 51  GGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKV 110

Query: 337 LKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPY 483
           L+ R++ Y       M     + +LS  LY RRF PY+   ++AG+D +
Sbjct: 111 LQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH 159


>AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome
           component C5 protein.
          Length = 258

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
 Frame = +1

Query: 160 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQ-MGPTLYVGLPGLATDTQTVFQR 336
           GG+  A+ G++   +A+D R       + T   +  Q +   + +   G   D   + + 
Sbjct: 51  GGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKV 110

Query: 337 LKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPY 483
           L+ R++ Y       M     + +LS  LY RRF PY+   ++AG+D +
Sbjct: 111 LQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH 159


>AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome beta
           subunit protein 1 protein.
          Length = 239

 Score = 37.9 bits (84), Expect = 0.010
 Identities = 23/92 (25%), Positives = 40/92 (43%)
 Frame = +1

Query: 160 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 339
           G  ++AM+    V + TD R    +   S    K+  +   + V   G A DTQ +    
Sbjct: 23  GTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIADIA 82

Query: 340 KFRMNLYELKENRMMRPKTFSAMLSNLLYERR 435
           K+ +++Y + EN+ +     S +    LY  R
Sbjct: 83  KYHIDVYTMTENKPVTIYRSSQIFRQFLYNYR 114


>Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical
           protein C36B1.4 protein.
          Length = 253

 Score = 35.5 bits (78), Expect = 0.055
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
 Frame = +1

Query: 160 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 339
           G   V ++G+DC+ I  +K+  I A        K+  +   + +   GL+ D + +  R 
Sbjct: 30  GSTAVGVRGKDCIVIGVEKK-SIPALQDDRTIRKIHMIDDHVMLAFAGLSADARVLVDRA 88

Query: 340 KFRMNLYELKENRMMRPKTFSAMLSNLLYERRF------GPYFIEPVIAGLDPYDNQP 495
           +     Y+L     +     S  ++N   ++RF       P+ I  +I G D +D  P
Sbjct: 89  RIECQSYKLTLEDPVTVAYISRYIANT--KQRFTQSPGRRPFGISMLIGGFD-HDGTP 143


>Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical
           protein K05C4.1 protein.
          Length = 284

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 25/103 (24%), Positives = 41/103 (39%)
 Frame = +1

Query: 196 VAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRLKFRMNLYELKEN 375
           + +A D R        S +  K+  +G  +   + G A D Q   + +     LYEL+E 
Sbjct: 83  IIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREK 142

Query: 376 RMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPYVV 504
             +     S   +N LY  R     +  ++AG D    Q + V
Sbjct: 143 TSITVSAASKYFANTLYGYRGQGLSVGSMVAGYDKKGPQIFKV 185


>U64855-3|AAB04982.1|  447|Caenorhabditis elegans Hypothetical
           protein ZK742.3 protein.
          Length = 447

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 175 AMKGQDCVAIATDKRFGIQAQTVSTN 252
           AMK    +AIA     G+QAQT  TN
Sbjct: 113 AMKSDGALAIAQTNHIGVQAQTAYTN 138


>AF016451-1|AAB66002.2|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein38 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 76  FELITLQ*FQVKKCLSFYITNMSILAYNGGAVVAMKG 186
           F LITL  FQ+  C ++Y        Y+GGA+ ++ G
Sbjct: 132 FILITLF-FQILGCQNYYNAEYRAFQYSGGAICSLYG 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,547,875
Number of Sequences: 27780
Number of extensions: 232121
Number of successful extensions: 448
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)