Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_K19
         (1080 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   0.57 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   8.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 523  QPXXPPPPP 549
            QP  PPPPP
Sbjct: 1354 QPPPPPPPP 1362



 Score = 22.2 bits (45), Expect(2) = 0.57
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 384  PPPPXPXPPXGR 419
            PPPP P P  G+
Sbjct: 1355 PPPPPPPPSSGQ 1366



 Score = 21.8 bits (44), Expect(2) = 0.57
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 369  QPXGPPPPP 395
            QP  PPPPP
Sbjct: 1354 QPPPPPPPP 1362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +3

Query: 312 GAPPPPXXGXXXTLPPXXXQPXGPPPPPXPXPPXGRP 422
           GAP P          P    P  P   P P  P G P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 24.2 bits (50), Expect = 2.0
 Identities = 14/49 (28%), Positives = 15/49 (30%), Gaps = 4/49 (8%)
 Frame = +3

Query: 300 PXVXGAPPPPXXGXXXTLPPXXXQPXGP----PPPPXPXPPXGRPXXXP 434
           P +      P  G     P     P  P    PP P   PP G P   P
Sbjct: 7   PIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 23.4 bits (48), Expect = 3.6
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +3

Query: 357 PXXXQPXGPPPPPXPXPPXGRPXXXP 434
           P   Q   PP P    PP G P   P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 6.2
 Identities = 11/44 (25%), Positives = 16/44 (36%)
 Frame = +1

Query: 919  RPXRGGRSXXPXXPXAXHSPRPRXXPXPPXXPXRAPVPGXXPSR 1050
            +P  G     P    +  +P+    P P   P     PG  PS+
Sbjct: 15   QPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQ 58



 Score = 22.6 bits (46), Expect = 6.2
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = +2

Query: 170 PXHPGXSXPPXPXNXNTRGGPXXXXPXRVP 259
           P  P    PP P      GGP    P + P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 511  PPXXQPXXPPPPPXGH 558
            P    P  PPPPP  H
Sbjct: 1852 PVSGSPEPPPPPPRNH 1867


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 466 PPPPPXXGG 492
           PPPPP  GG
Sbjct: 376 PPPPPIRGG 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,948
Number of Sequences: 438
Number of extensions: 6996
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 36150300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)