Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_K17
(862 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336... 30 2.7
04_03_0592 - 17678172-17679415,17679751-17679897,17680656-17681268 29 3.6
04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232... 29 4.8
03_02_0917 + 12372122-12372422,12372487-12372524,12373103-123731... 29 4.8
01_06_1259 - 35810926-35811777 29 4.8
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427... 29 6.3
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733... 28 8.3
07_01_0120 - 918901-920436 28 8.3
>01_05_0078 +
17931998-17932062,17933320-17933416,17933506-17933601,
17933957-17933988,17935143-17935595,17935831-17935975,
17936058-17936159,17937798-17937890,17939448-17939489,
17940092-17940202,17940446-17940517,17940596-17940714,
17940981-17941044,17941133-17942782
Length = 1046
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +3
Query: 90 RPAINSHGNSGIACCKQVLAKYLHYKLFSELCLTTVQQLLKRKD-AVDQKPMEHNLSRKN 266
RP G + + + L K +E + Q K K+ ++D+ HN SRK
Sbjct: 638 RPVKTQAGYGQVKAKEYHRSDSLPVKKQAETNYQQISQSGKEKEHSMDESNSTHNRSRKR 697
Query: 267 LKNEVGLQLPPEQKI 311
++V LPPE+++
Sbjct: 698 TPDQVDGSLPPEKQV 712
>04_03_0592 - 17678172-17679415,17679751-17679897,17680656-17681268
Length = 667
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 96 AINSHGNSGIACCKQVLAKYL-HYKLFSELCLTT 194
+IN G SGI CC+ + K + HYK++ + T
Sbjct: 69 SINGEGCSGIGCCQTAIPKGIKHYKVWFDTHFNT 102
>04_04_1441 -
33621423-33622118,33622251-33622315,33623140-33623227,
33623957-33625570
Length = 820
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/52 (26%), Positives = 32/52 (61%)
Frame = +3
Query: 273 NEVGLQLPPEQKILLSLLMMNKHQ*LNEVEADQKVPRKKRESRARVKVEVVD 428
+EV ++ ++K + L+ + + + + ++KV ++K+E + + KVEVVD
Sbjct: 321 DEVKVEKKKKKKAKKASLVEGETEGAKDSKQEKKVKKEKKEKKKKKKVEVVD 372
>03_02_0917 +
12372122-12372422,12372487-12372524,12373103-12373186,
12373796-12374504,12374641-12374729,12374834-12374903,
12374977-12375060,12375097-12375239,12375337-12375418,
12375605-12375687,12375769-12375835,12376287-12376376,
12377631-12377737,12377862-12377969
Length = 684
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 357 PRLATGACSSSEDLAESFVLVAAGGRPRFL 268
P+ AC S ED SF +GGRP+F+
Sbjct: 66 PKSNQKACKSFEDFDISFKSTRSGGRPKFV 95
>01_06_1259 - 35810926-35811777
Length = 283
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Frame = +2
Query: 191 DGSTVVEKKGRGR------PKANGTQPESKELKKRGRPPAATRTKDSAKSSD 328
+ S+ K+GR R P+ + T P + + K+RGRPP +A+S++
Sbjct: 189 NASSQPRKRGRPRKDATMYPRKDATIPANTQPKRRGRPPKNRNLSGNAQSAE 240
>04_04_0923 +
29441740-29441980,29442321-29442401,29442630-29442719,
29443123-29443203,29443721-29443774,29444062-29444111,
29444542-29444623,29444734-29444838,29445514-29445641,
29445726-29445797,29445887-29445937,29446029-29446100,
29446201-29446278,29446446-29447270,29447648-29448556
Length = 972
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 188 DDGSTVVEKKGRGRP--KANGTQPESKELKKRGRPPAATRTKDSAKSSDD 331
D GS E G+ K GT+ +SKEL+K+ + TKD +K + D
Sbjct: 33 DQGSEKKEMSGKNIKSIKETGTKGQSKELQKK-ESKSRKSTKDKSKKNKD 81
>07_03_1632 +
28271559-28271645,28272641-28272713,28273030-28273361,
28273455-28274791,28275451-28275848,28275963-28277644,
28277727-28277884,28278645-28278802,28279110-28279270,
28279826-28280014
Length = 1524
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 210 KRKDAVDQKPME-HNLSRKNLKNEVGLQLPPEQKILLSLL 326
K+K AVD K + N +KNE+ ++ P QKI+L L
Sbjct: 224 KKKKAVDTKRSKSRNDVSAVMKNEIDIETPAGQKIVLEAL 263
>07_01_0120 - 918901-920436
Length = 511
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 144 KLVYSKRCRYCRENLWRAARPAQRVAGGLENNTQSLKE 31
K ++KR R+C ++ ++ QRV G LEN E
Sbjct: 108 KFSHAKRIRFCSDSSSQSLGELQRVLGDLENTIADATE 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,842,219
Number of Sequences: 37544
Number of extensions: 319965
Number of successful extensions: 1050
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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