Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_K15
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   186   3e-48
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr...    26   6.3  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    26   6.3  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  186 bits (454), Expect = 3e-48
 Identities = 84/129 (65%), Positives = 105/129 (81%)
 Frame = +1

Query: 202 PLPXFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGC 381
           P P FK TAVVNG F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A +F +   
Sbjct: 8   PAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAASKFAERNA 67

Query: 382 EVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLF 561
           +V+  STDS ++HLA+INTPRK+GGLG +NIPL++D SH++SRDYGVL E+ G+ FRGLF
Sbjct: 68  QVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAFRGLF 127

Query: 562 IIDDKQNLR 588
           +ID K  LR
Sbjct: 128 LIDPKGVLR 136


>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 91  IRLSFLFQKRVILRCFRFSSIIQKSLXSTRCLCR*PNPL--PXFKATAVVNGEFKDISLS 264
           +R+ FL + + I  CF+ SSII+    + R  C     +    F   ++++G  +  +L 
Sbjct: 221 LRIVFLRKNKTIGACFKTSSIIEMVENNYRTWCSQNERMVEEDFDVKSLIDGVLQQCNLQ 280

Query: 265 D 267
           D
Sbjct: 281 D 281


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +1

Query: 163 SLXSTRCLCR*PNPLPXFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTE 333
           +L S+  L    +P P F+  +  +G+F   S +  K K V L  YP   TF   TE
Sbjct: 258 TLSSSTLLKLHQSPEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,042,092
Number of Sequences: 5004
Number of extensions: 37639
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)