Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_K14
         (935 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    74   5e-12
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    56   2e-06
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    52   2e-05
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    44   0.004
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    38   0.37 
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    36   1.5  
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    35   2.6  

>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 74.1 bits (174), Expect = 5e-12
 Identities = 41/59 (69%), Positives = 42/59 (71%)
 Frame = -1

Query: 605 LVRGAEPMEKRQQRGLFTVPGXXXXXXLTCSFLRYPLILWITVLPPLSELIPLAAAERP 429
           LVRGAEPMEKR +  L  V        LTCSF  YPLILWITVLPPLSEL PLAA ERP
Sbjct: 2   LVRGAEPMEKRLRCWLLPV----LCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 55.6 bits (128), Expect = 2e-06
 Identities = 31/57 (54%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +3

Query: 342 CINESANARGXAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 509
           CI + A AR  AV VL ALPL RS TRC RS GCG      +  R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 52.4 bits (120), Expect = 2e-05
 Identities = 22/29 (75%), Positives = 25/29 (86%)
 Frame = +3

Query: 378 VCVLGALPLPRSLTRCARSFGCGERYQLT 464
           +C  G +PLPRSLTR ARSFGCGERY+LT
Sbjct: 30  ICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +2

Query: 461 HSKAVIRLSTESGDNAGKNM 520
           HSKAVIRLSTESGDNAGKNM
Sbjct: 40  HSKAVIRLSTESGDNAGKNM 59


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 37.9 bits (84), Expect = 0.37
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = -2

Query: 412 ERGSGRAPNTQTAXPRALADSLMQ 341
           +R +  APNTQTA PRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 35.9 bits (79), Expect = 1.5
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 340 SALMNRPTXGXRRFAYW 390
           +ALMNRPT G RRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 35.1 bits (77), Expect = 2.6
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = +1

Query: 154 MIRYIDEFGQTTTXMQ 201
           MIRYIDEFGQTTT MQ
Sbjct: 349 MIRYIDEFGQTTTRMQ 364


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 465,819,871
Number of Sequences: 1657284
Number of extensions: 7084532
Number of successful extensions: 16561
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16559
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 85732778670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)