Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_K07
         (949 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.76 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.76 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   1.0  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    25   1.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   7.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   9.3  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 408 DKDKSVWF-LDHDY-LENMYGMFKKVNAREKVVGWYHTGPKLHQNDI 542
           D   + W+ +  +Y +E+   M+K  N  +K + WY  G  L +N I
Sbjct: 50  DLSDAEWYDVGRNYDMESNMDMYKDKNVVQKFLWWYKQGMFLSRNAI 96


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 408 DKDKSVWF-LDHDY-LENMYGMFKKVNAREKVVGWYHTGPKLHQNDI 542
           D   + W+ +  +Y +E+   M+K  N  +K + WY  G  L +N I
Sbjct: 50  DLSDAEWYDVGRNYDMESNMDMYKDKNVVQKFLWWYKQGMFLSRNAI 96


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
 Frame = +3

Query: 495 VVGWYHTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPK--------DLGLPTEAYQAVE 650
           ++ W   GP+ H+    I ++  +Y P  +++    K +        ++ LPT  Y    
Sbjct: 317 IINWNFRGPRTHRMPQLIRKIFLKYLPTILMMRRPKKTRLRWMMEIPNVTLPTSTYSGSP 376

Query: 651 EVHDDGTPTSRT 686
                  PTS T
Sbjct: 377 TELPKHLPTSLT 388


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 182 IFTYIFGICCCSILYYKVIIH 120
           IF ++F +C   IL   V+IH
Sbjct: 14  IFNFVFAVCGLGILTLGVLIH 34


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = +3

Query: 420 SVWFLDHDY-LENMYGMF 470
           S W+L+HDY LEN    F
Sbjct: 206 SGWYLNHDYNLENKLNYF 223


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 9/13 (69%), Positives = 11/13 (84%), Gaps = 1/13 (7%)
 Frame = +3

Query: 420 SVWFLDHDY-LEN 455
           S W+L+HDY LEN
Sbjct: 206 SGWYLNHDYNLEN 218


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 171 YIRDLLLFYFILQSYYSLNYT 109
           +  DLL +  +L+ +YS+N T
Sbjct: 228 FTTDLLSYNILLRRHYSMNST 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,607
Number of Sequences: 438
Number of extensions: 3985
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)