Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_K04
         (880 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0313 - 8866182-8866381,8866470-8866638                           32   0.70 
06_01_0172 + 1362101-1363708                                           31   0.92 
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931     31   1.2  
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289...    29   4.9  
03_02_0800 + 11337206-11337532,11337634-11337957,11338060-113381...    29   6.5  
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    28   8.6  
06_01_0099 + 824557-825532,826090-826245,826422-828064                 28   8.6  

>02_02_0313 - 8866182-8866381,8866470-8866638
          Length = 122

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 489 YYVGVCTGW--GATGSWKIEDGAEFDTPDRLEYKFGPVASGSLEFDYRGPHNCHV 647
           ++VG   GW  G  G W  E+G  F   D L +K+ P+    L+ D+ G   C V
Sbjct: 29  WHVGDDKGWTFGVAG-W--ENGKAFKVGDVLVFKYSPMMHNVLQVDHAGYDGCKV 80


>06_01_0172 + 1362101-1363708
          Length = 535

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 370 LTEGNIVVFGFVGIAALSPLDARVKLFHSYPGL--IPNLSQFTTSESAQAGVPQAPGKSK 543
           L   NI++ G VGI     LDA +K+    PGL   P++  +TT  SA  G     G  K
Sbjct: 193 LVSCNILLKGLVGIG---DLDAALKVLDEMPGLGITPDVVTYTTVLSAYCGKGDIEGAQK 249

Query: 544 M 546
           +
Sbjct: 250 L 250


>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
          Length = 246

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 369 LNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEP 479
           L G  +R  WV W   +I AG  G    F+    PEP
Sbjct: 195 LVGWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQPEP 231


>01_06_0837 -
           32328191-32328369,32328682-32328731,32328844-32328923,
           32329193-32329345,32329505-32329654,32329877-32330000,
           32330086-32330198,32330287-32330420,32330566-32331232
          Length = 549

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +3

Query: 357 APXILNGGEYRGF---WVRWDSGIISAGREGEAIPFISWSDPEPFPVYY 494
           +P +L GG Y G    W+R     I+ G    + P + + D  P  ++Y
Sbjct: 211 SPVVLFGGSYGGMLAAWMRLKYPHIAVGALASSAPILQFEDVVPSTIFY 259


>03_02_0800 +
           11337206-11337532,11337634-11337957,11338060-11338194,
           11338280-11338519
          Length = 341

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 705 WENT-QSVIRYCRQKPDKVTIPTPGIMNPNEL 797
           W +T Q  I YC+Q PDKV  PT  +  P  L
Sbjct: 152 WSHTPQYQIGYCQQCPDKVAWPTAELGPPPAL 183


>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
            18577344-18577458,18578179-18578333,18578673-18580621,
            18580691-18581372,18581550-18581621,18582558-18583199,
            18583301-18583402,18585011-18585100
          Length = 2192

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 397  GFVGIAALSPLDA-RVKLFHSYPGLIPNLSQFTTSESAQAGVPQAPGKS 540
            G +G+   S  D+  +K   S P L PNLS  T++E  +  VP+ P  S
Sbjct: 1515 GKLGLPNFSLEDSIPLKHLKSVPDLFPNLSLGTSNEYLRNCVPELPNSS 1563


>06_01_0099 + 824557-825532,826090-826245,826422-828064
          Length = 924

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 439 PSRPAEIMPLSQRTQKPRYSPPLRIXGAFNFNLIGLGSIFPDDA 308
           PS P + +P +  + KPR  PP R  G +    + + S  P DA
Sbjct: 424 PSPPQQQLPPAS-SSKPRRPPPHRSHGGYKNGTVSVDSGAPHDA 466


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,579,177
Number of Sequences: 37544
Number of extensions: 560058
Number of successful extensions: 1439
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1439
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)