Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_K04
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical...    31   0.82 
AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical ...    30   1.9  
U55857-2|AAA98027.2|  397|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical...    28   7.7  

>AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical
           protein Y106G6H.12 protein.
          Length = 975

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 299 NAKSVIRKNRTKPDKVE-IESPGNS*RRGISWFL 397
           N KSV+ K   +P +V+ IES GN   R ISW L
Sbjct: 700 NEKSVVMKKFDRPGRVKGIESDGNCFYRAISWCL 733


>AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical
           protein C17B7.5 protein.
          Length = 820

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/65 (24%), Positives = 33/65 (50%)
 Frame = +1

Query: 130 NVMDVATDDNLQYQFFPXFKWISSVQSQSSE*CPHRAHDRPARIGSYV*GDDWRLGKR*E 309
           N MD+ T+ +LQ++  P  K+   ++  ++    H    +   +GS+     WRL +R E
Sbjct: 388 NCMDIPTNGSLQFEKPPFDKFFIGIKMLNNMTTNHTNLPKIDNVGSFNVNGHWRLIRRRE 447

Query: 310 RHQEK 324
           + + +
Sbjct: 448 KFERQ 452


>U55857-2|AAA98027.2|  397|Caenorhabditis elegans Hypothetical
           protein K08D10.9 protein.
          Length = 397

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 21/72 (29%), Positives = 27/72 (37%)
 Frame = +1

Query: 358 PRXFLTEGNIVVFGFVGIAALSPLDARVKLFHSYPGLIPNLSQFTTSESAQAGVPQAPGK 537
           P  F T+ N   F  V  A        +  F S+      LS +  S S   G    PG 
Sbjct: 288 PSLFHTKPNGTFFAGVDFAVTVQNHGPIDTFQSF-----YLSWYNASSSTNGGFYGYPGS 342

Query: 538 SKMERNSILRTG 573
              E+NS +R G
Sbjct: 343 PSNEKNSTIRAG 354


>U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical protein
            C18H2.5 protein.
          Length = 1139

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 139  DVATDDNLQYQFFPXFKWISSVQSQSS 219
            D +TDD L  QF   FK I+S + QSS
Sbjct: 921  DKSTDDKLTNQFMEVFKSIASNEPQSS 947


>AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical
           protein F32D1.7 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 484 GKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSP 377
           G GSGS  D +G + P+R +  +P +     PR  P
Sbjct: 159 GSGSGSGNDSSGSSGPTRMSGQVPSTSGPPPPRPPP 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,296,608
Number of Sequences: 27780
Number of extensions: 454327
Number of successful extensions: 1140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)