Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_K04
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   1.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.6  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             24   1.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   2.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.7  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   8.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   8.6  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 369 EXPGLSISTLSGLVLFFLMTLLAFPQPPIITSYIG 265
           E   LSIS L  L +FFL+     P   ++   +G
Sbjct: 270 EKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLG 304


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +3

Query: 717 QSVIRYCRQKPDKVTIPTP---GIMNPNELRSS*LNGDAADCWC 839
           +S I Y   K DK T+      GI++P E R   +NG  A  +C
Sbjct: 196 RSFIDYVHPK-DKATLADQIKNGIVSPQEERPKGINGRRASLFC 238


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +3

Query: 717 QSVIRYCRQKPDKVTIPTP---GIMNPNELRSS*LNGDAADCWC 839
           +S I Y   K DK T+      GI++P E R   +NG  A  +C
Sbjct: 191 RSFIDYVHPK-DKATLADQIKNGIVSPQEERPKGINGRRASLFC 233


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 357 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 265
           LSIS L  L +FFL+ +   P   ++   +G
Sbjct: 278 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 308


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 357 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 265
           LSIS L  L +FFL+ +   P   ++   +G
Sbjct: 278 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 308


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 528 SWKIEDGAEFDTPDRLEYKFGPVASGSLEFDYRGPHN 638
           SW  + G EF   D  + K+  + SG L     GP +
Sbjct: 138 SWHTDQGEEFVPGDDYDGKYLVLPSGELHIRDVGPED 174


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 369 EXPGLSISTLSGLVLFFLMTLLAFPQPPIITSYIG 265
           E   LSIS L  L +FFL+     P   +    +G
Sbjct: 266 EKVSLSISILLSLTVFFLLLAEIIPPTSLTVPLLG 300


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 860 PSPTSCHAPTICRISI 813
           P P  CHA  I R+++
Sbjct: 476 PEPCRCHARCIARLAL 491


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 437  LASSGDNAAIPTNPKTTIFPSVK 369
            +ASS  N    T   TTI P VK
Sbjct: 949  VASSASNVTNVTTNLTTILPPVK 971


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 860 PSPTSCHAPTICRISI 813
           P P  CHA  I R+++
Sbjct: 476 PEPCRCHARCIARLAL 491


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,874
Number of Sequences: 438
Number of extensions: 6073
Number of successful extensions: 26
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)