Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_K03
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr ...   106   4e-24
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    27   2.7  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   4.7  

>SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 147

 Score =  106 bits (255), Expect = 4e-24
 Identities = 52/96 (54%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
 Frame = +1

Query: 283 VKKPMFTLX-VMDELKRIIIDSEIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTSKTG 459
           ++K MF    V+ E++RI+ DSEI+ E D  WP  ++ G+QELEI +  +HI F T K G
Sbjct: 45  IRKEMFVSELVLKEVQRIVDDSEIIKESDESWPPENKDGKQELEIRMNGKHIMFETCKLG 104

Query: 460 SLVDVNQSRDPEGLRGFYYLVQDLKCLVFSLIGLHF 567
           SL DV  S DPEGL+ FYYL+QDLK L FSLI L+F
Sbjct: 105 SLADVQNSDDPEGLKVFYYLIQDLKALCFSLISLNF 140



 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 34/50 (68%), Positives = 43/50 (86%)
 Frame = +3

Query: 150 TDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYV 299
           +DFY+RYY GH G+FGHEFLEF++  DG  RYANNSNY+ND++IRKE +V
Sbjct: 2   SDFYVRYYSGHHGRFGHEFLEFDYHSDGLARYANNSNYRNDSLIRKEMFV 51


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 171 YVGHKGKFGHEFLEFEFRPD-GKLRYANNSNYKNDTMIR 284
           +V  KG F H  LEF   PD G    ANN   +N  +++
Sbjct: 13  WVKSKGAFVHPSLEFSVIPDAGSCVLANNDINENTVLLK 51


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +1

Query: 286  KKPMFTLXVMDELKRIIIDSEIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTSKTG 459
            ++ +FT+   D   ++II   I+ +DDR     D +  +++ +   E H+  + S  G
Sbjct: 1224 ERDLFTIWSEDNADKLIIRCRIIRDDDRKAEDDDNMIEEDVFLKTIEGHMLESISLRG 1281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,854,550
Number of Sequences: 5004
Number of extensions: 53030
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)