Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_K03
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81108-3|CAB03239.1|  152|Caenorhabditis elegans Hypothetical pr...   143   1e-34
AF007861-1|AAB66721.1|  147|Caenorhabditis elegans ce-Mago protein.   143   1e-34
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    30   1.9  
AF040653-8|AAB95031.1|  532|Caenorhabditis elegans F-box b prote...    29   4.4  
AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical ...    29   5.8  
AF043701-5|ABP57822.1|  166|Caenorhabditis elegans Hypothetical ...    29   5.8  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z70037-1|CAA93878.1|  493|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    28   7.7  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    28   7.7  

>Z81108-3|CAB03239.1|  152|Caenorhabditis elegans Hypothetical
           protein R09B3.5 protein.
          Length = 152

 Score =  143 bits (347), Expect = 1e-34
 Identities = 65/86 (75%), Positives = 73/86 (84%)
 Frame = +1

Query: 310 VMDELKRIIIDSEIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTSKTGSLVDVNQSRD 489
           V+ ELKRII DSEIM EDD  WP+PD++GRQELEI+   EHISFTT K G+L DVN S+D
Sbjct: 62  VLSELKRIIEDSEIMQEDDDNWPEPDKIGRQELEILYKNEHISFTTGKIGALADVNNSKD 121

Query: 490 PEGLRGFYYLVQDLKCLVFSLIGLHF 567
           P+GLR FYYLVQDLKCLVFSLIGLHF
Sbjct: 122 PDGLRSFYYLVQDLKCLVFSLIGLHF 147



 Score =  106 bits (254), Expect = 2e-23
 Identities = 46/61 (75%), Positives = 51/61 (83%)
 Frame = +3

Query: 147 STDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHPXCNGRVK 326
           + DFY+RYYVGHKGKFGHEFLEFEFRP+G LRYANNSNYKNDTMIRKEA V       +K
Sbjct: 8   AADFYVRYYVGHKGKFGHEFLEFEFRPNGSLRYANNSNYKNDTMIRKEATVSESVLSELK 67

Query: 327 K 329
           +
Sbjct: 68  R 68


>AF007861-1|AAB66721.1|  147|Caenorhabditis elegans ce-Mago protein.
          Length = 147

 Score =  143 bits (347), Expect = 1e-34
 Identities = 65/86 (75%), Positives = 73/86 (84%)
 Frame = +1

Query: 310 VMDELKRIIIDSEIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTSKTGSLVDVNQSRD 489
           V+ ELKRII DSEIM EDD  WP+PD++GRQELEI+   EHISFTT K G+L DVN S+D
Sbjct: 57  VLSELKRIIEDSEIMQEDDDNWPEPDKIGRQELEILYKNEHISFTTGKIGALADVNNSKD 116

Query: 490 PEGLRGFYYLVQDLKCLVFSLIGLHF 567
           P+GLR FYYLVQDLKCLVFSLIGLHF
Sbjct: 117 PDGLRSFYYLVQDLKCLVFSLIGLHF 142



 Score =  104 bits (250), Expect = 7e-23
 Identities = 45/61 (73%), Positives = 50/61 (81%)
 Frame = +3

Query: 147 STDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHPXCNGRVK 326
           + DFY+RYYVGHKGKFGHEFLEFEFRP+G LRY NNSNYKNDTMIRKEA V       +K
Sbjct: 3   AADFYVRYYVGHKGKFGHEFLEFEFRPNGSLRYGNNSNYKNDTMIRKEATVSESVLSELK 62

Query: 327 K 329
           +
Sbjct: 63  R 63


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3a protein.
          Length = 1816

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 469 DVNQSRDPEGLRGFYYLVQDLKCLVFSLIGL 561
           ++ Q   P  L  FYY     KCL F+ +GL
Sbjct: 477 EMTQGEGPSALTRFYYDASQRKCLAFNYLGL 507


>AF040653-8|AAB95031.1|  532|Caenorhabditis elegans F-box b protein
           protein 50 protein.
          Length = 532

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/58 (20%), Positives = 28/58 (48%)
 Frame = +1

Query: 55  ILYIELNTRVVSVEPLKWKFSRINLKLCAKCLRIFTYDIMLDTRESLATNFSNLNSGL 228
           +LYI   +++ S++   W+     L++  +CL+ F    ++ +  S   N + +   L
Sbjct: 82  LLYISKTSKIASIQCNDWEVDETELQILKECLKGFNISTLVISSNSRMQNTATIIDAL 139


>AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical
           protein C17B7.5 protein.
          Length = 820

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 67  ELNTRVVSVEPLKWKFSRINLKLCAKCLRI-FTYDIMLDTRESLATNFSN 213
           E N  V+S   L W+   I+L   ++   + FTYD+M DT      N S+
Sbjct: 622 ESNQDVISTPLLAWRQGHIDLGRISRENHVKFTYDVMRDTYSHTQLNGSS 671


>AF043701-5|ABP57822.1|  166|Caenorhabditis elegans Hypothetical
           protein K12C11.7 protein.
          Length = 166

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -1

Query: 248 GITQFPVRPEFKFEKFVAKLSLVSNIISYVKIRRHFAQSFKFILENF 108
           GI + P  PE      +A  SL    +  +   RHFA SF F L+NF
Sbjct: 74  GIWEIPEEPEPSPRGKLA--SLAPFTMESISSWRHFASSFLFFLQNF 118


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
           protein K08C7.3b protein.
          Length = 3672

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 442 TTSKTGSLVDVNQSRDPEGLRGFYYLVQDL 531
           T +  G L+D+N+ RDP   R ++Y ++++
Sbjct: 263 TRTLQGHLMDMNEWRDPTVTRRYFYAIKEI 292


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
           protein K08C7.3a protein.
          Length = 3704

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 442 TTSKTGSLVDVNQSRDPEGLRGFYYLVQDL 531
           T +  G L+D+N+ RDP   R ++Y ++++
Sbjct: 263 TRTLQGHLMDMNEWRDPTVTRRYFYAIKEI 292


>Z70037-1|CAA93878.1|  493|Caenorhabditis elegans Hypothetical
           protein T27D12.1 protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -1

Query: 314 ITXRVNIGFFTYHCIVFIVGIIGITQFPVRPEF--KFEKFVAKLSLVSNIISYVKI 153
           I   + +GF+ +  + F+ G      FPV   F  K+  F      VS++++YV++
Sbjct: 123 IPLSIRMGFYYFLAVRFLQGFAFAANFPVIGSFCAKWSYFKQNGLFVSSLVAYVQL 178


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
           chain protein.
          Length = 3704

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 442 TTSKTGSLVDVNQSRDPEGLRGFYYLVQDL 531
           T +  G L+D+N+ RDP   R ++Y ++++
Sbjct: 263 TRTLQGHLMDMNEWRDPTVTRRYFYAIKEI 292


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
           protein.
          Length = 3704

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 442 TTSKTGSLVDVNQSRDPEGLRGFYYLVQDL 531
           T +  G L+D+N+ RDP   R ++Y ++++
Sbjct: 263 TRTLQGHLMDMNEWRDPTVTRRYFYAIKEI 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,583,690
Number of Sequences: 27780
Number of extensions: 290544
Number of successful extensions: 663
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)