Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_K01
         (1094 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   5.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   5.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   7.2  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 546 PXTSPPPXHTXXPP 587
           P + PPP H   PP
Sbjct: 133 PLSQPPPAHMGIPP 146



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +1

Query: 637 PHNXXXXLXPPXPXPPHXP 693
           PH       PP P P H P
Sbjct: 727 PHEAFDVKLPPPPHPHHQP 745


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 546 PXTSPPPXHTXXPP 587
           P + PPP H   PP
Sbjct: 25  PLSQPPPAHMGIPP 38



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +1

Query: 637 PHNXXXXLXPPXPXPPHXP 693
           PH       PP P P H P
Sbjct: 619 PHEAFDVKLPPPPHPHHQP 637


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 664 PPXPXPPHXPXPQTXPP 714
           PP P  P  P P   PP
Sbjct: 175 PPLPQVPPLPLPPIFPP 191


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.145    0.509 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,066
Number of Sequences: 336
Number of extensions: 1751
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 31547682
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)