Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_K01
         (1094 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    32   0.63 
Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical pr...    31   1.9  
U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase prot...    31   1.9  
U50310-5|AAA92541.1|  318|Caenorhabditis elegans Ground-like (gr...    30   2.5  
AF098992-4|AAK73869.2|  250|Caenorhabditis elegans Hypothetical ...    30   2.5  
Z66565-6|CAA91483.1|  165|Caenorhabditis elegans Hypothetical pr...    30   3.3  
AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical...    29   5.8  
AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA topoisome...    29   5.8  
U56963-8|AAB38121.1|  155|Caenorhabditis elegans Hypothetical pr...    29   7.7  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    29   7.7  
AF078790-10|AAC26931.1|  197|Caenorhabditis elegans Hypothetical...    29   7.7  
AC024788-3|AAF60614.2|   98|Caenorhabditis elegans Caenacin (cae...    29   7.7  

>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 32.3 bits (70), Expect = 0.63
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -1

Query: 725 GXXWGGXVWGXGXWGGXGXGG 663
           G  WGG   G G WGG G GG
Sbjct: 75  GGNWGGNGGGRGDWGGNGGGG 95



 Score = 29.9 bits (64), Expect = 3.3
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 725 GXXWGGXVWGXGXWGGXGXG 666
           G  WGG   G G WGG G G
Sbjct: 65  GGDWGGNNGGGGNWGGNGGG 84


>Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical
           protein Y48E1B.1 protein.
          Length = 497

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +2

Query: 641 TXXPGXSXPPHXPPPTXPXPKPXPP 715
           T  P    PP  PPP  P P P PP
Sbjct: 346 TEIPPIISPPAPPPPPPPPPPPPPP 370


>U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase protein
           4 protein.
          Length = 751

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
 Frame = -1

Query: 716 WGGXVW--GXGXWGGXGXGG 663
           WGG  W  G G WGG G GG
Sbjct: 707 WGGSRWGGGRGGWGGGGWGG 726



 Score = 30.3 bits (65), Expect = 2.5
 Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = -1

Query: 725 GXXWGGXV--WGXGXWGGXGXGGXS 657
           G  WGG    WG G WGG G G  S
Sbjct: 709 GSRWGGGRGGWGGGGWGGGGWGKRS 733


>U50310-5|AAA92541.1|  318|Caenorhabditis elegans Ground-like (grd
           related) protein 9 protein.
          Length = 318

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +3

Query: 282 PPPRGXXTXGXXXLRXXAPPXXXPAPPPPRP 374
           PPP      G   +    PP   P PPPP P
Sbjct: 118 PPPVQYQNQGPQYIEAPPPPPSPPPPPPPPP 148


>AF098992-4|AAK73869.2|  250|Caenorhabditis elegans Hypothetical
           protein F53C3.6a protein.
          Length = 250

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = -1

Query: 365 RGGRGXXXGGGPRXXXGXPXGXXPXXGGXRPG 270
           RGGRG   GGG R   G   G     GG R G
Sbjct: 22  RGGRGRGGGGGGRGSSGARGGVGGRGGGGRGG 53


>Z66565-6|CAA91483.1|  165|Caenorhabditis elegans Hypothetical
           protein T04F8.8 protein.
          Length = 165

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 650 PGXSXPPHXPPPTXPXPKPXP 712
           P    PP  PPPT P P+P P
Sbjct: 92  PQGYVPPPPPPPTQPEPEPEP 112


>AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical
           protein Y56A3A.27 protein.
          Length = 759

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = +3

Query: 255 GPKXXXGAGPPPRGXXTXGXXXLRXXAPPXXXPAPPPPRP 374
           GP    G G PPRG    G         P   PA P  RP
Sbjct: 617 GPGGPGGGGGPPRGPGGGGGGGPTGPPAPPKPPAKPRGRP 656


>AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA
           topoisomerase III protein.
          Length = 759

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = +3

Query: 255 GPKXXXGAGPPPRGXXTXGXXXLRXXAPPXXXPAPPPPRP 374
           GP    G G PPRG    G         P   PA P  RP
Sbjct: 617 GPGGPGGGGGPPRGPGGGGGGGPTGPPAPPKPPAKPRGRP 656


>U56963-8|AAB38121.1|  155|Caenorhabditis elegans Hypothetical
           protein T13A10.1 protein.
          Length = 155

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 201 PPXXXXPPPXXKKKKKXXXKKKKEKXK 121
           PP    PPP  +KK +   + KKEK K
Sbjct: 50  PPAPPPPPPEAEKKPEKEEEPKKEKSK 76


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 650 PGXSXPPHXPPPTXPXPKPXPP 715
           P  S PP  PP T P P+  PP
Sbjct: 151 PPRSPPPRRPPMTPPSPQRRPP 172


>AF078790-10|AAC26931.1|  197|Caenorhabditis elegans Hypothetical
           protein F36H12.5 protein.
          Length = 197

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 201 PPXXXXPPPXXKKKKKXXXKKKKEKXK 121
           PP    PPP  +KK +   + KKEK K
Sbjct: 50  PPASPPPPPEAEKKPETGEEPKKEKSK 76


>AC024788-3|AAF60614.2|   98|Caenorhabditis elegans Caenacin
           (caenorhabditis bacteriocin)protein 6 protein.
          Length = 98

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 725 GXXWGGXVWGXGXWGGXGXGG 663
           G  WG  +WG G WG  G GG
Sbjct: 59  GWGWGRPMWG-GGWGRRGWGG 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.145    0.509 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,163,940
Number of Sequences: 27780
Number of extensions: 222435
Number of successful extensions: 3184
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2699
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2950351116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)