Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_J23
         (991 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   5.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +2

Query: 647 PPPXPPPXXXXXXGXXGGGXXXPXPPP 727
           PPP PPP      G  G G   P PPP
Sbjct: 761 PPPPPPPP-----GVAGAGPPPPPPPP 782


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 24.2 bits (50), Expect(2) = 5.4
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = +2

Query: 650 PPXPPPXXXXXXGXXGGGXXXPXPPP 727
           PP PPP               P PPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPP 315



 Score = 20.6 bits (41), Expect(2) = 5.4
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +2

Query: 647 PPPXPPP 667
           PPP PPP
Sbjct: 253 PPPIPPP 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,256,566
Number of Sequences: 5004
Number of extensions: 10007
Number of successful extensions: 36
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)