Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_J23
         (991 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888     30   3.3  
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504...    29   4.3  
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973...    29   7.6  

>04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888
          Length = 213

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 647 PPPXPPPXXXXXXGXXGGGXXXPXPPP 727
           PPP P P      G  GGG   P  PP
Sbjct: 128 PPPKPKPCECTYCGGHGGGCNKPAVPP 154


>07_01_0674 +
           5047503-5047646,5047808-5047901,5048743-5048828,
           5049380-5049429,5049517-5049586,5049668-5049749,
           5049867-5050267,5050414-5050941,5051823-5052044
          Length = 558

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 647 PPPXPPPXXXXXXGXXGGGXXXPXPPP 727
           PPP PPP      G  G     P PPP
Sbjct: 231 PPPPPPPKPANIAGAPGLPLPPPPPPP 257


>08_02_0864 +
           21994286-21994989,21996257-21996958,21997221-21997374,
           21997494-21997838,21998323-21999240,21999312-21999640,
           21999709-21999832,21999901-22000071,22000188-22001648,
           22002647-22002910,22003866-22004189
          Length = 1831

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 647 PPPXPPPXXXXXXGXXGGGXXXPXP 721
           PPP PPP         GGG   P P
Sbjct: 29  PPPLPPPPASQVGAGGGGGAASPQP 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,446,590
Number of Sequences: 37544
Number of extensions: 219120
Number of successful extensions: 2012
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1776
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2893540780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)